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Jakob Lykke Andersen
Jakob Lykke Andersen
Associate Professor, University of Southern Denmark
Verified email at imada.sdu.dk - Homepage
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Cited by
Cited by
Year
A software package for chemically inspired graph transformation
JL Andersen, C Flamm, D Merkle, PF Stadler
Graph Transformation: 9th International Conference, ICGT 2016, in Memory of …, 2016
712016
Inferring chemical reaction patterns using rule composition in graph grammars
JL Andersen, C Flamm, D Merkle, PF Stadler
Journal of Systems Chemistry 4, 1-14, 2013
522013
Chemical transformation motifs—Modelling pathways as integer hyperflows
JL Andersen, C Flamm, D Merkle, PF Stadler
IEEE/ACM transactions on computational biology and bioinformatics 16 (2 …, 2017
502017
Navigating the chemical space of HCN polymerization and hydrolysis: guiding graph grammars by mass spectrometry data
JL Andersen, T Andersen, C Flamm, MM Hanczyc, D Merkle, PF Stadler
Entropy 15 (10), 4066-4083, 2013
472013
Generic strategies for chemical space exploration
JL Andersen, C Flamm, D Merkle, PF Stadler
International journal of computational biology and drug design 7 (2-3), 225-258, 2014
452014
Maximizing output and recognizing autocatalysis in chemical reaction networks is NP-complete
JL Andersen, C Flamm, D Merkle, PF Stadler
Journal of Systems Chemistry 3, 1-9, 2012
392012
An intermediate level of abstraction for computational systems chemistry
JL Andersen, C Flamm, D Merkle, PF Stadler
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2017
312017
Defining autocatalysis in chemical reaction networks
JL Andersen, C Flamm, D Merkle, PF Stadler
arXiv preprint arXiv:2107.03086, 2021
212021
Rule composition in graph transformation models of chemical reactions
JL Andersen, C Flamm, D Merkle, PF Stadler
Match 80 (3), 661-704, 2018
212018
Chemical graph transformation with stereo-information
JL Andersen, C Flamm, D Merkle, PF Stadler
Graph Transformation: 10th International Conference, ICGT 2017, Held as Part …, 2017
192017
50 Shades of rule composition: From chemical reactions to higher levels of abstraction
JL Andersen, C Flamm, D Merkle, PF Stadler
Formal Methods in Macro-Biology 8738, 117-135, 0
15*
In silico Support for Eschenmoser’s Glyoxylate Scenario
JL Andersen, C Flamm, D Merkle, PF Stadler
Israel Journal of Chemistry 55 (8), 919-933, 2015
142015
An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions
A Arya, J Ray, S Sharma, RC Simbron, A Lozano, HB Smith, JL Andersen, ...
Chemical Science 13 (17), 4838-4853, 2022
122022
A generic framework for engineering graph canonization algorithms
JL Andersen, D Merkle
Journal of Experimental Algorithmics (JEA) 25, 1-26, 2020
112020
Towards mechanistic prediction of mass spectra using graph transformation
JL Andersen, R Fagerberg, C Flamm, R Kianian, D Merkle, PF Stadler
MATCH Communications in Mathematical and in Computer Chemistry 80 (3), 705-731, 2018
82018
Graph Transformation
JL Andersen, C Flamm, D Merkle, PF Stadler
Springer, Cham, Switzerland, 2016
82016
Rewriting theory for the life sciences: A unifying theory of CTMC semantics
N Behr, J Krivine, JL Andersen, D Merkle
Theoretical Computer Science 884, 68-115, 2021
72021
Exploring plant sesquiterpene diversity by generating chemical networks
WMC Silva, JL Andersen, MT Holanda, MEMT Walter, MM Brigido, ...
Processes 7 (4), 240, 2019
72019
Graph transformation for enzymatic mechanisms
JL Andersen, R Fagerberg, C Flamm, W Fontana, J Kolčák, CVFP Laurent, ...
Bioinformatics 37 (Supplement_1), i392-i400, 2021
62021
Graph transformations, semigroups, and isotopic labeling
JL Andersen, D Merkle, PS Rasmussen
International Symposium on Bioinformatics Research and Applications, 196-207, 2019
62019
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