Alvaro Martinez Barrio
Alvaro Martinez Barrio
CDAO at Pixelgen Technologies
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Evolution of Darwin’s finches and their beaks revealed by genome sequencing
S Lamichhaney, J Berglund, MS Almén, K Maqbool, M Grabherr, ...
Nature 518 (7539), 371-375, 2015
Strong signatures of selection in the domestic pig genome
CJ Rubin, HJ Megens, AM Barrio, K Maqbool, S Sayyab, D Schwochow, ...
Proceedings of the National Academy of Sciences 109 (48), 19529-19536, 2012
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
M Carneiro, CJ Rubin, F Di Palma, FW Albert, J Alföldi, AM Barrio, ...
Science 345 (6200), 1074-1079, 2014
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping
A Vaysse, A Ratnakumar, T Derrien, E Axelsson, G Rosengren Pielberg, ...
PLoS genetics 7 (10), e1002316, 2011
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring
S Lamichhaney, AM Barrio, N Rafati, G Sundström, CJ Rubin, ER Gilbert, ...
Proceedings of the National Academy of Sciences 109 (47), 19345-19350, 2012
Resolving the full spectrum of human genome variation using Linked-Reads
P Marks, S Garcia, AM Barrio, K Belhocine, J Bernate, R Bharadwaj, ...
Genome research 29 (4), 635-645, 2019
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
A Martinez Barrio, S Lamichhaney, G Fan, N Rafati, M Pettersson, ...
elife 5, e12081, 2016
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA)
SA Schattgen, K Guion, JC Crawford, A Souquette, AM Barrio, ...
Nature biotechnology 40 (1), 54-63, 2022
The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage
D Wright, CJ Rubin, A Martinez Barrio, K Schütz, S Kerje, H Brändström, ...
Molecular ecology 19 (23), 5140-5156, 2010
The genomic footprint of sexual conflict
A Sayadi, A Martinez Barrio, E Immonen, J Dainat, D Berger, ...
Nature ecology & evolution 3 (12), 1725-1730, 2019
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene
SV Saenko, S Lamichhaney, AM Barrio, N Rafati, L Andersson, ...
Scientific reports 5 (1), 17118, 2015
The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships
Á Martínez Barrio, M Ekerljung, P Jern, F Benachenhou, GO Sperber, ...
PloS one 6 (5), e19832, 2011
EVALLER: a web server for in silico assessment of potential protein allergenicity
AM Barrio, D Soeria-Atmadja, A Nister, MG Gustafsson, U Hammerling, ...
Nucleic acids research 35 (suppl_2), W694-W700, 2007
RAD sequencing and a hybrid Antarctic fur seal genome assembly reveal rapidly decaying linkage disequilibrium, global population structure and evidence for inbreeding
E Humble, KK Dasmahapatra, A Martinez-Barrio, I Gregório, J Forcada, ...
G3: Genes, Genomes, Genetics 8 (8), 2709-2722, 2018
A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them
E Humble, A Martinez‐Barrio, J Forcada, PN Trathan, MAS Thorne, ...
Molecular ecology resources 16 (4), 909-921, 2016
Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX
Á Martínez Barrio, E Lagercrantz, GO Sperber, J Blomberg, ...
BMC bioinformatics 10, 1-12, 2009
The methylation landscape and its role in domestication and gene regulation in the chicken
A Höglund, R Henriksen, J Fogelholm, AM Churcher, ...
Nature Ecology & Evolution 4 (12), 1713-1724, 2020
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