Daniele De Martino
Daniele De Martino
Biofisika Institute - Ikerbasque
Verified email at ijs.si
Title
Cited by
Cited by
Year
Congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Physical Review E 79 (1), 015101, 2009
1412009
Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding
D De Martino, M Mori, V Parisi
PloS one 10 (4), e0122670, 2015
482015
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
D De Martino, F Capuani, M Mori, A De Martino, E Marinari
Metabolites 3 (4), 946-966, 2013
462013
A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
D De Martino, M Figliuzzi, A De Martino, E Marinari
PLoS Comput Biol 8 (6), e1002562, 2012
402012
Dynamic facilitation picture of a higher-order glass singularity
M Sellitto, D De Martino, F Caccioli, JJ Arenzon
Physical review letters 105 (26), 265704, 2010
342010
Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli
D De Martino, F Capuani, A De Martino
Physical biology 13 (3), 036005, 2016
302016
An introduction to the maximum entropy approach and its application to inference problems in biology
A De Martino, D De Martino
Heliyon 4 (4), e00596, 2018
292018
A minimal model for congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Journal of Statistical Mechanics: Theory and Experiment 2009 (08), P08023, 2009
222009
Phase transitions in crowd dynamics of resource allocation
A Ghosh, D De Martino, A Chatterjee, M Marsili, BK Chakrabarti
Physical Review E 85 (2), 021116, 2012
212012
Statistical mechanics for metabolic networks during steady state growth
D De Martino, AMC Andersson, T Bergmiller, CC Guet, G Tkačik
Nature communications 9 (1), 1-9, 2018
192018
Thermodynamics of biochemical networks and duality theorems
D De Martino
Physical Review E 87 (5), 052108, 2013
172013
Shear-and vibration-induced order-disorder transitions in granular media
MP Ciamarra, A Coniglio, D De Martino, M Nicodemi
The European Physical Journal E 24 (4), 411-415, 2007
172007
Quantifying the entropic cost of cellular growth control
D De Martino, F Capuani, A De Martino
Physical Review E 96 (1), 010401, 2017
132017
Quantitative constraint-based computational model of tumor-to-stroma coupling via lactate shuttle
F Capuani, D De Martino, E Marinari, A De Martino
Scientific reports 5, 11880, 2015
82015
Reaction networks as systems for resource allocation: A variational principle for their non-equilibrium steady states
A De Martino, D De Martino, R Mulet, G Uguzzoni
PloS one 7 (7), e39849, 2012
82012
Identifying all moiety conservation laws in genome-scale metabolic networks
A De Martino, D De Martino, R Mulet, A Pagnani
PloS one 9 (7), e100750, 2014
72014
Inferring metabolic phenotypes from the exometabolome through a thermodynamic variational principle
D De Martino, F Capuani, A De Martino
New Journal of Physics 16 (11), 115018, 2014
62014
Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes
D De Martino
Physical Review E 96 (6), 060401, 2017
52017
Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth
D De Martino, D Masoero
Journal of Statistical Mechanics: Theory and Experiment 2016 (12), 123502, 2016
52016
Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D De Martino
Physical review E 95 (6), 062419, 2017
42017
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Articles 1–20