Arun Konagurthu
Arun Konagurthu
Senior Lecturer
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Citado por
Citado por
MUSTANG: a multiple structural alignment algorithm
AS Konagurthu, JC Whisstock, PJ Stuckey, AM Lesk
Proteins: Structure, Function, and Bioinformatics 64 (3), 559-574, 2006
On the origin of distribution patterns of motifs in biological networks
AS Konagurthu, AM Lesk
BMC Systems Biology 2 (1), 1-8, 2008
MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography
AS Konagurthu, CF Reboul, JW Schmidberger, JA Irving, AM Lesk, ...
PLoS One 5 (4), e10048, 2010
Minimum message length inference of secondary structure from protein coordinate data
AS Konagurthu, AM Lesk, L Allison
Bioinformatics 28 (12), i97-i105, 2012
Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs
K Mahmood, GI Webb, J Song, JC Whisstock, AS Konagurthu
Nucleic acids research 40 (6), e44-e44, 2012
Structural search and retrieval using a tableau representation of protein folding patterns
AS Konagurthu, PJ Stuckey, AM Lesk
Bioinformatics 24 (5), 645-651, 2008
A fast indexing approach for protein structure comparison
L Zhang, J Bailey, AS Konagurthu, K Ramamohanarao
BMC bioinformatics 11 (1), 1-9, 2010
Progressive multiple alignment using sequence triplet optimizations and three-residue exchange costs
AS Konagurthu, J Whisstock, PJ Stuckey
Journal of bioinformatics and computational biology 2 (04), 719-745, 2004
A new statistical framework to assess structural alignment quality using information compression
JH Collier, L Allison, AM Lesk, M Garcia de la Banda, AS Konagurthu
Bioinformatics 30 (17), i512-i518, 2014
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes
K Mahmood, AS Konagurthu, J Song, AM Buckle, GI Webb, JC Whisstock
Bioinformatics 26 (17), 2076-2084, 2010
Single and multiple input modules in regulatory networks
AS Konagurthu, AM Lesk
Proteins: Structure, Function, and Bioinformatics 73 (2), 320-324, 2008
Statistical inference of protein structural alignments using information and compression
JH Collier, L Allison, AM Lesk, PJ Stuckey, M Garcia de la Banda, ...
Bioinformatics 33 (7), 1005-1013, 2017
An information measure for comparing top k lists
JH Collier, AS Konagurthu
2014 IEEE 10th international conference on e-science 1, 127-134, 2014
Optimal sum-of-pairs multiple sequence alignment using incremental Carrillo and Lipman bounds
AS Konagurthu, PJ Stuckey
Journal of Computational Biology 13 (3), 668-685, 2006
On sufficient statistics of least-squares superposition of vector sets
AS Konagurthu, P Kasarapu, L Allison, JH Collier, AM Lesk
Journal of Computational Biology 22 (6), 487-497, 2015
Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank
JH Collier, AM Lesk, M Garcia de la Banda, AS Konagurthu
Nucleic acids research 40 (W1), W334-W339, 2012
Cataloging topologies of protein folding patterns
AS Konagurthu, AM Lesk
Journal of Molecular Recognition: An Interdisciplinary Journal 23 (2), 253-257, 2010
Piecewise linear approximation of protein structures using the principle of minimum message length
AS Konagurthu, L Allison, PJ Stuckey, AM Lesk
Bioinformatics 27 (13), i43-i51, 2011
Statistical compression of protein folding patterns for inference of recurrent substructural themes
R Subramanian, L Allison, PJ Stuckey, MG De La Banda, D Abramson, ...
2017 Data Compression Conference (DCC), 340-349, 2017
On representing protein folding patterns using non-linear parametric curves
P Kasarapu, MG De La Banda, AS Konagurthu
IEEE/ACM transactions on computational biology and bioinformatics 11 (6 …, 2014
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