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Rainer Machne
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Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ...
Molecular systems biology 7 (1), 543, 2011
2942011
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks
R Machné, A Finney, S Müller, J Lu, S Widder, C Flamm
Bioinformatics 22 (11), 1406-1407, 2006
1292006
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1052020
Evolutionary footprints of nucleosome positions in yeast
S Washietl, R Machné, N Goldman
Trends in Genetics 24 (12), 583-587, 2008
762008
Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth
R Steuer, H Knoop, R Machné
Journal of experimental botany 63 (6), 2259-2274, 2012
632012
The yin and yang of yeast transcription: elements of a global feedback system between metabolism and chromatin
R Machné, DB Murray
PloS one 7 (6), e37906, 2012
592012
The yin and yang of yeast transcription: elements of a global feedback system between metabolism and chromatin
R Machné, DB Murray
PloS one 7 (6), e37906, 2012
592012
The future of origin of life research: bridging decades-old divisions
M Preiner, S Asche, S Becker, HC Betts, A Boniface, E Camprubi, ...
Life 10 (3), 20, 2020
582020
How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis
R Lehmann, R Machné, J Georg, M Benary, IM Axmann, R Steuer
BMC bioinformatics 14 (1), 1-16, 2013
272013
The dynamics of cellular energetics during continuous yeast culture
C Amariei, R Machne, K Sasidharan, W Gottstein, M Tomita, T Soga, ...
2013 35th Annual International Conference of the IEEE Engineering in …, 2013
202013
Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data
G Doose, M Alexis, R Kirsch, S Findeiß, D Langenberger, R Machné, ...
RNA biology 10 (7), 1204-1210, 2013
192013
Similarity-based segmentation of multi-dimensional signals
R Machné, DB Murray, PF Stadler
Scientific reports 7 (1), 1-11, 2017
162017
Inverse Bifurcation Analysis of a Model for the Mammalian G1/S Regulatory Module
J Lu, HW Engl, R Machné, P Schuster
International Conference on Bioinformatics Research and Development, 168-184, 2007
162007
Temporal partitioning of the yeast cellular network
DB Murray, C Amariei, K Sasidharan, R Machné, MA Aon, D Lloyd
Systems Biology of Metabolic and Signaling Networks, 323-349, 2014
152014
Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program
C Amariei, R Machné, V Stolc, T Soga, M Tomita, DB Murray
Microbial Cell 1 (9), 279, 2014
122014
SBML Ode Solver library: Extensions for inverse analysis
J Lu, S Muller, R Machné, C Flamm
Proceedings of the Fifth International Workshop on Computational Systems …, 2008
112008
The structural code of cyanobacterial genomes
R Lehmann, R Machné, H Herzel
Nucleic acids research 42 (14), 8873-8883, 2014
102014
A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kLa identification
S Müller, DB Murray, R Machne
Biotechnology and Bioengineering 109 (12), 2997-3006, 2012
92012
A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kLa identification
S Müller, DB Murray, R Machne
Biotechnology and Bioengineering 109 (12), 2997-3006, 2012
92012
Mitochondrial genome evolution
M Bernt, R Machné, AH Sahyoun, M Middendorf, PF Stadler
eLS, 2013
62013
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Articles 1–20