Alex Washburne
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A phylogenetic transform enhances analysis of compositional microbiota data
JD Silverman, AD Washburne, S Mukherjee, LA David
Elife 6, e21887, 2017
Establishing microbial composition measurement standards with reference frames
JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ...
Nature communications 10 (1), 1-11, 2019
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
AD Washburne, JD Silverman, JW Leff, DJ Bennett, JL Darcy, ...
PeerJ 5, e2969, 2017
Fitness tradeoffs between spores and nonaggregating cells can explain the coexistence of diverse genotypes in cellular slime molds
CE Tarnita, A Washburne, R Martinez-Garcia, AE Sgro, SA Levin
Proceedings of the National Academy of Sciences 112 (9), 2776-2781, 2015
The microbiome stress project: toward a global meta-analysis of environmental stressors and their effects on microbial communities
JD Rocca, M Simonin, JR Blaszczak, JG Ernakovich, SM Gibbons, ...
Frontiers in microbiology 9, 3272, 2019
Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States
JD Silverman, N Hupert, AD Washburne
Science translational medicine 12 (554), 2020
Methods for phylogenetic analysis of microbiome data
AD Washburne, JT Morton, J Sanders, D McDonald, Q Zhu, AM Oliverio, ...
Nature microbiology 3 (6), 652-661, 2018
Signatures of ecological processes in microbial community time series
K Faust, F Bauchinger, B Laroche, S De Buyl, L Lahti, AD Washburne, ...
Microbiome 6 (1), 1-13, 2018
Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data
AD Washburne, JD Silverman, JT Morton, DJ Becker, D Crowley, ...
Ecological Monographs 89 (2), e01353, 2019
Prioritizing surveillance of Nipah virus in India
RK Plowright, DJ Becker, DE Crowley, AD Washburne, T Huang, ...
PLoS neglected tropical diseases 13 (6), e0007393, 2019
Guiding longitudinal sampling in IBD cohorts
Y Vázquez-Baeza, A Gonzalez, ZZ Xu, A Washburne, HH Herfarth, ...
Gut 67 (9), 1743-1745, 2018
Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses
DJ Becker, DE Crowley, AD Washburne, RK Plowright
Biology Letters 15 (12), 20190423, 2019
The ecology and diversity of microbial eukaryotes in geothermal springs
AM Oliverio, JF Power, A Washburne, SC Cary, MB Stott, N Fierer
The ISME journal 12 (8), 1918-1928, 2018
Dynamic and integrative approaches to understanding pathogen spillover
DJ Becker, AD Washburne, CL Faust, JRC Pulliam, EA Mordecai, ...
Philosophical Transactions of the Royal Society B 374 (1782), 20190014, 2019
The problem of scale in the prediction and management of pathogen spillover
DJ Becker, AD Washburne, CL Faust, EA Mordecai, RK Plowright
Philosophical Transactions of the Royal Society B 374 (1782), 20190224, 2019
Novel covariance-based neutrality test of time-series data reveals asymmetries in ecological and economic systems
AD Washburne, JW Burby, D Lacker
PLoS computational biology 12 (9), e1005124, 2016
Percolation models of pathogen spillover
AD Washburne, DE Crowley, DJ Becker, KR Manlove, ML Childs, ...
Philosophical Transactions of the Royal Society B 374 (1782), 20180331, 2019
Taxonomic patterns in the zoonotic potential of mammalian viruses
AD Washburne, DE Crowley, DJ Becker, KJ Olival, M Taylor, VJ Munster, ...
PeerJ 6, e5979, 2018
Prey carrying capacity modulates the effect of predation on prey diversity
J Socolar, A Washburne
The American Naturalist 186 (3), 333-347, 2015
Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing
JD Rocca, M Simonin, ES Bernhardt, AD Washburne, JP Wright
Ecology 101 (3), e02956, 2020
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Articles 1–20