Shaojun Xie
Shaojun Xie
Bioinformatics Core at Purdue university
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Mutational evidence for the critical role of CBF transcription factors in cold acclimation in Arabidopsis
C Zhao, Z Zhang, S Xie, T Si, Y Li, JK Zhu
Plant physiology 171 (4), 2744-2759, 2016
Genome-wide genetic changes during modern breeding of maize
Y Jiao, H Zhao, L Ren, W Song, B Zeng, J Guo, B Wang, Z Liu, J Chen, ...
Nature genetics 44 (7), 812-815, 2012
Reciprocal regulation of the TOR kinase and ABA receptor balances plant growth and stress response
P Wang, Y Zhao, Z Li, CC Hsu, X Liu, L Fu, YJ Hou, Y Du, S Xie, C Zhang, ...
Molecular cell 69 (1), 100-112. e6, 2018
Dynamic transcriptome landscape of maize embryo and endosperm development
J Chen, B Zeng, M Zhang, S Xie, G Wang, A Hauck, J Lai
Plant physiology 166 (1), 252-264, 2014
Regulatory link between DNA methylation and active demethylation in Arabidopsis
M Lei, H Zhang, R Julian, K Tang, S Xie, JK Zhu
Proceedings of the National Academy of Sciences 112 (11), 3553-3557, 2015
Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm
M Zhang, H Zhao, S Xie, J Chen, Y Xu, K Wang, H Zhao, H Guan, X Hu, ...
Proceedings of the National Academy of Sciences 108 (50), 20042-20047, 2011
Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing
X Qi, S Xie, Y Liu, F Yi, J Yu
Plant Molecular Biology 83 (4), 459-473, 2013
Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize
M Zhang, S Xie, X Dong, X Zhao, B Zeng, J Chen, H Li, W Yang, H Zhao, ...
Genome research 24 (1), 167-176, 2014
Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity
Y Zhao, Z Zhang, J Gao, P Wang, T Hu, Z Wang, YJ Hou, Y Wan, W Liu, ...
Cell reports 23 (11), 3340-3351. e5, 2018
Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana
Y Wan, K Tang, D Zhang, S Xie, X Zhu, Z Wang, Z Lang
Genome biology 16 (1), 1-26, 2015
Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress
L Lei, J Shi, J Chen, M Zhang, S Sun, S Xie, X Li, B Zeng, L Peng, ...
The Plant Journal 84 (6), 1206-1218, 2015
A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation
CG Duan, X Wang, S Xie, L Pan, D Miki, K Tang, CC Hsu, M Lei, Y Zhong, ...
Cell research 27 (2), 226-240, 2017
Genome‐wide Transcription Factor Gene Prediction and their Expressional Tissue‐Specificities in MaizeF
Y Jiang, B Zeng, H Zhao, M Zhang, S Xie, J Lai
Journal of integrative plant biology 54 (9), 616-630, 2012
An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress
Y Zhu, B Wang, K Tang, CC Hsu, S Xie, H Du, Y Yang, WA Tao, JK Zhu
PLoS Genetics 13 (12), e1007124, 2017
Type one protein phosphatase 1 and its regulatory protein inhibitor 2 negatively regulate ABA signaling
YJ Hou, Y Zhu, P Wang, Y Zhao, S Xie, G Batelli, B Wang, CG Duan, ...
PLoS Genetics 12 (3), e1005835, 2016
Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis
C Wang, X Dong, D Jin, Y Zhao, S Xie, X Li, X He, Z Lang, J Lai, JK Zhu, ...
Plant physiology 167 (3), 905-914, 2015
Genome-wide characterization of microRNA in foxtail millet (Setaria italica)
F Yi, S Xie, Y Liu, X Qi, J Yu
BMC plant biology 13 (1), 1-15, 2013
REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis
Y Zhao, S Xie, X Li, C Wang, Z Chen, J Lai, Z Gong
The Plant cell 26 (6), 2660-2675, 2014
Initiation and amplification of SnRK2 activation in abscisic acid signaling
Z Lin, Y Li, Y Wang, X Liu, L Ma, Z Zhang, C Mu, Y Zhang, L Peng, S Xie, ...
Nature communications 12 (1), 1-13, 2021
ViewBS: a powerful toolkit for visualization of high-throughput bisulfite sequencing data
X Huang, S Zhang, K Li, J Thimmapuram, S Xie
Bioinformatics 34 (4), 708-709, 2018
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