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Alessandra Breschi
Alessandra Breschi
Verified email at stanford.edu
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Year
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18882014
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11362020
Comparison of the transcriptional landscapes between human and mouse tissues
S Lin, Y Lin, JR Nery, MA Urich, A Breschi, CA Davis, A Dobin, C Zaleski, ...
Proceedings of the National Academy of Sciences 111 (48), 17224-17229, 2014
5862014
Transcriptional diversity during lineage commitment of human blood progenitors
L Chen, M Kostadima, JHA Martens, G Canu, SP Garcia, E Turro, ...
Science 345 (6204), 1251033, 2014
3222014
Principles of regulatory information conservation between mouse and human
Y Cheng, Z Ma, BH Kim, W Wu, P Cayting, AP Boyle, V Sundaram, X Xing, ...
Nature 515, 371–375, 2014
2772014
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
PG Ferreira, M Muñoz-Aguirre, F Reverter, CP Sa Godinho, A Sousa, ...
Nature communications 9 (1), 490, 2018
2522018
Glucotypes reveal new patterns of glucose dysregulation
H Hall, D Perelman, A Breschi, P Limcaoco, R Kellogg, T McLaughlin, ...
PLOS Biology 16 (7), e2005143, 2018
2462018
Comparative transcriptomics in human and mouse
A Breschi, TR Gingeras, R Guigó
Nature Reviews Genetics 18 (7), 425-440, 2017
2372017
ggsashimi: Sashimi plot revised for browser-and annotation-independent splicing visualization
D Garrido-Martín, E Palumbo, R Guigó, A Breschi
PLoS computational biology 14 (8), e1006360, 2018
1562018
Gene-specific patterns of expression variation across organs and species
A Breschi, S Djebali, J Gillis, DD Pervouchine, A Dobin, CA Davis, ...
Genome biology 17, 1-13, 2016
962016
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 5903, 2015
882015
A limited set of transcriptional programs define major cell types
A Breschi, M Muñoz-Aguirre, V Wucher, CA Davis, D Garrido-Martín, ...
Genome research 30 (7), 1047-1059, 2020
31*2020
Dynamics of microRNA expression during mouse prenatal development
S Rahmanian, R Murad, A Breschi, W Zeng, M Mackiewicz, B Williams, ...
Genome research 29 (11), 1900-1909, 2019
232019
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
152020
Use of clinical RNA-sequencing in the detection of actionable fusions compared to DNA-sequencing alone.
J Michuda, BH Park, AL Cummings, S Devarakonda, B O'Neil, S Islam, ...
Journal of Clinical Oncology 40 (16_suppl), 3077-3077, 2022
92022
Validation of a transcriptome-based assay for classifying cancers of unknown primary origin
J Michuda, A Breschi, J Kapilivsky, K Manghnani, C McCarter, ...
Molecular Diagnosis & Therapy 27 (4), 499-511, 2023
72023
bsAS, an antisense long non-coding RNA, essential for correct wing development through regulation of blistered/DSRF isoform usage
S Pérez-Lluch, CC Klein, A Breschi, M Ruiz-Romero, A Abad, E Palumbo, ...
PLoS genetics 16 (12), e1009245, 2020
72020
The histone code reader PHD finger protein 7 controls sex-linked disparities in gene expression and malignancy in Drosophila
C Molnar, JP Heinen, J Reina, S Llamazares, E Palumbo, A Breschi, ...
Science Advances 5 (8), eaaw7965, 2019
62019
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 605 (7909), E3-E3, 2022
42022
Comparative analysis of neutrophil and monocyte epigenomes
D Rico, JHA Martens, K Downes, E Carrillo-de-Santa-Pau, V Pancaldi, ...
BioRxiv, 237784, 2017
42017
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Articles 1–20