| Anatomy of Escherichia coli σ 70 promoters RK Shultzaberger, Z Chen, KA Lewis, TD Schneider Nucleic acids research 35 (3), 771-788, 2007 | 240 | 2007 |
| Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay SE Munchel, RK Shultzaberger, N Takizawa, K Weis Molecular biology of the cell 22 (15), 2787-2795, 2011 | 224 | 2011 |
| Anatomy of Escherichia coli ribosome binding sites RK Shultzaberger, RE Bucheimer, KE Rudd, TD Schneider Journal of molecular biology 313 (1), 215-228, 2001 | 201 | 2001 |
| The essential gene set of a photosynthetic organism BE Rubin, KM Wetmore, MN Price, S Diamond, RK Shultzaberger, ... Proceedings of the National Academy of Sciences 112 (48), E6634-E6643, 2015 | 192 | 2015 |
| The C-terminal domain of DNA gyrase A adopts a DNA-bending β-pinwheel fold KD Corbett, RK Shultzaberger, JM Berger Proceedings of the National Academy of Sciences 101 (19), 7293-7298, 2004 | 192 | 2004 |
| Discovery of Fur binding site clusters in Escherichia coli by information theory models Z Chen, KA Lewis, RK Shultzaberger, IG Lyakhov, M Zheng, B Doan, ... Nucleic acids research 35 (20), 6762-6777, 2007 | 117 | 2007 |
| Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX RK Shultzaberger, TD Schneider Nucleic acids research 27 (3), 882-887, 1999 | 68 | 1999 |
| Redox crisis underlies conditional light–dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA S Diamond, BE Rubin, RK Shultzaberger, Y Chen, CD Barber, SS Golden Proceedings of the National Academy of Sciences 114 (4), E580-E589, 2017 | 57 | 2017 |
| The Fitness Landscapes of cis-Acting Binding Sites in Different Promoter and Environmental Contexts RK Shultzaberger, DS Malashock, JF Kirsch, MB Eisen PLoS genetics 6 (7), e1001042, 2010 | 46 | 2010 |
| Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context RK Shultzaberger, JS Boyd, S Diamond, RJ Greenspan, SS Golden Annual review of genetics 49, 485-505, 2015 | 40 | 2015 |
| Correlation between binding rate constants and individual information of E. coli Fis binding sites RK Shultzaberger, LR Roberts, IG Lyakhov, IA Sidorov, AG Stephen, ... Nucleic acids research 35 (16), 5275-5283, 2007 | 38 | 2007 |
| Probing the Informational and regulatory plasticity of a transcription factor DNA–binding domain RK Shultzaberger, SJ Maerkl, JF Kirsch, MB Eisen PLoS genetics 8 (3), e1002614, 2012 | 26 | 2012 |
| Flexible promoter architecture requirements for coactivator recruitment DY Chiang, DA Nix, RK Shultzaberger, AP Gasch, MB Eisen BMC molecular biology 7, 1-18, 2006 | 24 | 2006 |
| Single mutations in sasA enable a simpler ΔcikA gene network architecture with equivalent circadian properties RK Shultzaberger, JS Boyd, T Katsuki, SS Golden, RJ Greenspan Proceedings of the National Academy of Sciences 111 (47), E5069-E5075, 2014 | 16 | 2014 |
| Determining physical constraints in transcriptional initiation complexes using DNA sequence analysis RK Shultzaberger, DY Chiang, AM Moses, MB Eisen PLoS One 2 (11), e1199, 2007 | 12 | 2007 |
| Linked paired strand sequencing EN Glezer, MM Fabani, S Shore, D Witters US Patent 11,359,238, 2022 | 11 | 2022 |
| Conservation of the behavioral and transcriptional response to social experience among Drosophilids RK Shultzaberger, SJ Johnson, J Wagner, K Ha, TA Markow, ... Genes, Brain and Behavior 18 (1), e12487, 2019 | 10 | 2019 |
| High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence RK Shultzaberger, ML Paddock, T Katsuki, RJ Greenspan, SS Golden Methods in enzymology 551, 53-72, 2015 | 5 | 2015 |
| Linked paired strand sequencing EN Glezer, MM Fabani, T Looney, S Shore, R Shultzaberger, D Witters US Patent App. 17/500,733, 2022 | 4 | 2022 |
| Polynucleotide barcodes for long read sequencing EN Glezer, MM Fabani, R Shultzaberger, B Sridhar, G Stengel | 3 | 2021 |
