Martin Krallinger

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Lynette HirschmanThe MITRE CorporationVerified email at mitre.org
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Marta VillegasResearcher Universitat Pompeu FabraVerified email at upf.edu
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Antonio Miranda-EscaladaReserch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Cathy WuUniversity of DelawareVerified email at udel.edu
Cecilia ArighiUniversity of DelawareVerified email at dbi.udel.edu
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Montserrat MarimonUniversitat Pompeu FabraVerified email at upf.edu
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Florentino Fdez-RiverolaProfessor, Computer Science Department, University of VigoVerified email at uvigo.es
Jordi Armengol-EstapéBarcelona Supercomputing CenterVerified email at bsc.es
Ashish TendulkarGoogleVerified email at google.com
Eduardo Andrés-León (ORCID: 0000-...Head of Bioinformatics Unit at IPBLN-CSIC (grid.429021.c / ROR 05ncvzk72)Verified email at csic.es
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov

Martin Krallinger

*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)

Verified email at bsc.es - Homepage

Biomedicine NLP text mining bioinformatics AI


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Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9 (2), 1-19, 2008	324	2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9 (2), 1-14, 2008	262	2008
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6 (7), 1-8, 2005	255	2005
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9 (2), 1-9, 2008	227	2008
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	204	2005
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	196	2015
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015	193	2015
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6 (1), 1-13, 2005	181	2005
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	174	2013
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	172	2012
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	170	2017
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (8), 1-31, 2011	166	2011
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017	138	2017
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	132	2010
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9 (2), 1-15, 2008	127	2008
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	121	2005
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12 (8), 1-9, 2011	118	2011
Overview of the CLEF eHealth evaluation lab 2020 L Goeuriot, H Suominen, L Kelly, A Miranda-Escalada, M Krallinger, Z Liu, ... International Conference of the Cross-Language Evaluation Forum for European …, 2020	113	2020
BioCreative III interactive task: an overview CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC bioinformatics 12 (8), 1-21, 2011	99	2011
Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011	93	2011

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