Martin Krallinger

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	All	Since 2016
Citations	4577	1983
h-index	33	27
i10-index	60	44

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2005200620072008200920102011201220132014201520162017201820192020202139 84 74 158 196 309 269 361 307 357 359 359 347 292 421 511 51

Co-authors

Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics SL, Selerity Inc, IE UniversityVerified email at datacatalytics.com
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Julen OyarzabalVerified email at columbusvp.com
Marta VillegasResearcher Universitat Pompeu FabraVerified email at upf.edu
Miguel VazquezVerified email at bsc.es
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Cathy WuEdward G. Jefferson Chair of Bioinformatics & Computational Biology, University of DelawareVerified email at udel.edu
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Cecilia ArighiUniversity of DelawareVerified email at dbi.udel.edu
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Montserrat MarimonUniversitat Pompeu FabraVerified email at upf.edu
Florentino Fdez-RiverolaProfessor, Computer Science Department, University of VigoVerified email at uvigo.es
Ashish TendulkarGoogleVerified email at tifr.res.in
Eduardo Andrés-León (ORCID: 0000-...Head of Bioinformatics Unit at Institute of Parasitology and Biomedicine "Lopez-Neyra"Verified email at csic.es
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Antonio Miranda-EscaladaReserch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Alexander A MorganKhosla VenturesVerified email at stanford.edu

Martin Krallinger

*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)

Verified email at bsc.es - Homepage

BioNLP text mining information extraction information retrieval named entity recognition


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Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9 (2), 1-19, 2008	306	2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9 (2), 1-14, 2008	253	2008
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6 (7), 1-8, 2005	243	2005
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9 (2), 1-9, 2008	222	2008
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	193	2005
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6 (1), 1-13, 2005	179	2005
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	165	2012
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	163	2013
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (8), 1-31, 2011	161	2011
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015	157	2015
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	144	2015
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	128	2010
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	124	2017
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9 (2), 1-15, 2008	124	2008
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	118	2005
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12 (8), 1-9, 2011	111	2011
Overview of the CLEF eHealth evaluation lab 2020 L Goeuriot, H Suominen, L Kelly, A Miranda-Escalada, M Krallinger, Z Liu, ... International Conference of the Cross-Language Evaluation Forum for European …, 2020	94	2020
BioCreative III interactive task: an overview CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC bioinformatics 12 (8), 1-21, 2011	93	2011
Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011	87	2011
Introducing meta-services for biomedical information extraction F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ... Genome biology 9 (2), 1-11, 2008	87	2008

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