Daniel Faria

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Catia PesquitaLASIGE, Dep. Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at xldb.di.fc.ul.pt
Francisco M CoutoLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at campus.ul.pt
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de Informática, LASIGEVerified email at di.fc.ul.pt
Isabel F. CruzUniversity of Illinois at ChicagoVerified email at uic.edu
Emanuel SantosInvited Assistant Professor, Faculty of Sciences, University of LisbonVerified email at di.fc.ul.pt
Ernesto Jimenez-RuizLecturer in Artificial Intelligence. City, University of London, UKVerified email at city.ac.uk
Patrick LambrixLinköping University, SwedenVerified email at liu.se
Hugo P. BastosPost-Doc Research Associate, University of CambridgeVerified email at cam.ac.uk
Valentina IvanovaRISE Research Institutes of SwedenVerified email at ri.se
Zlatan DragisicSectraVerified email at sectra.com
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk
Matteo PalmonariAssociate Professor, University of Milan-BicoccaVerified email at disco.unimib.it
Bruno TavaresSapoVerified email at telecom.pt
Andreas SchlickerResearch Scientist Bioinformatics, Bayer Pharma AGVerified email at bayer.com
Tiago GregoUniversity of CambridgeVerified email at cam.ac.uk
João D FerreiraLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de LisboaVerified email at fc.ul.pt
Paulo Esteves-VerissimoProfessor of Computer Science, RC3, CEMSE -- KAUSTVerified email at kaust.edu.sa
Mário J. SilvaProfessor of Computer Science and Engineering at IST, Portugal; Senior Researcher at INESC-ID LisboaVerified email at tecnico.ulisboa.pt

Daniel Faria

LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa

Verified email at tecnico.ulisboa.pt

Bioinformatics Data Management Knowledge Engineering Semantic Web


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Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS computational biology 5 (7), e1000443, 2009	881	2009
Dynamic modularity in protein interaction networks predicts breast cancer outcome IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ... Nature biotechnology 27 (2), 199-204, 2009	832	2009
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9 (5), 1-16, 2008	411	2008
The AgreementMakerLight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto OTM Confederated International Conferences, 527-541, 2013	306	2013
Evaluating GO-based semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcao, F Couto Proc. 10th Annual Bio-Ontologies Meeting 37 (40), 38, 2007	143	2007
Results of the ontology alignment evaluation initiative 2014 Z Dragisic, K Eckert, J Euzenat, D Faria, A Ferrara, R Granada, V Ivanova, ... 9th ISWC workshop on ontology matching (OM) 1317, 61-104, 2014	107	2014
User validation in ontology alignment Z Dragisic, V Ivanova, P Lambrix, D Faria, E Jiménez-Ruiz, C Pesquita The Semantic Web–ISWC 2016: 15th International Semantic Web Conference, Kobe …, 2016	103	2016
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015	90	2015
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume 3, 2013	79	2013
Results of the ontology alignment evaluation initiative 2016 M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... OM: Ontology matching, 73-129, 2016	77	2016
Results of the ontology alignment evaluation initiative 2015 M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, G Flouris, ... 10th ISWC workshop on ontology matching (OM), 60-115, 2015	75	2015
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009	72	2009
AgreementMakerLight Results for OAEI 2014 D Faria, C Martins, A Nanavaty, A Taheri, C Pesquita, E Santos, IF Cruz, ... Ontology Matching Workshop, 105-112, 2014	68	2014
AgreementMakerLight Results for OAEI 2013 D Faria, C Pesquita, E Santos, IF Cruz, FM Couto Ontology Matching Workshop 1111, 101-108, 2013	68	2013
Enabling reusability of plant phenomic datasets with MIAPPE 1.1 EA Papoutsoglou, D Faria, D Arend, E Arnaud, IN Athanasiadis, I Chaves, ... New Phytologist 227 (1), 260-273, 2020	66	2020
Results of the ontology alignment evaluation initiative 2017? M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... CEUR Workshop Proceedings 2032, 61-113, 2017	56	2017
Results of the ontology alignment evaluation initiative 2018 A Algergawy, M Cheatham, D Faria, A Ferrara, I Fundulaki, I Harrow, ... 13th International Workshop on Ontology Matching co-located with the 17th …, 2018	55	2018
Tackling the challenges of matching biomedical ontologies D Faria, C Pesquita, I Mott, C Martins, FM Couto, IF Cruz Journal of biomedical semantics 9, 1-19, 2018	47	2018
Automatic background knowledge selection for matching biomedical ontologies D Faria, C Pesquita, E Santos, IF Cruz, FM Couto PloS one 9 (11), e111226, 2014	47	2014
Results of AML participation in OAEI 2018 D Faria, C Pesquita, B Balasubramani, T Tervo, D Carriço, R Garrilha, ... Proceedings of the 13th International Workshop on Ontology Matching co …, 2018	46	2018

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