Daniel Faria

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Catia PesquitaLASIGE, Dep. Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at xldb.di.fc.ul.pt
Francisco M CoutoLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa, PortugalVerified email at campus.ul.pt
Andre O FalcaoProfessor of Computer Science, Univ. Lisboa, Faculdade de Ciências - Dept de Informática, LASIGEVerified email at di.fc.ul.pt
Isabel F. CruzUniversity of Illinois at ChicagoVerified email at uic.edu
Emanuel SantosInvited Assistant Professor, Faculty of Sciences, University of LisbonVerified email at di.fc.ul.pt
Ernesto Jimenez-RuizLecturer in Artificial Intelligence. City, University of London, UKVerified email at city.ac.uk
Patrick LambrixLinköping University, SwedenVerified email at liu.se
Hugo P. BastosPost-Doc Research Associate, University of CambridgeVerified email at cam.ac.uk
Zlatan DragisicSectraVerified email at sectra.com
Valentina IvanovaRISE Research Institutes of SwedenVerified email at ri.se
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk
Matteo PalmonariAssociate Professor, University of Milan-BicoccaVerified email at disco.unimib.it
Bruno TavaresSapoVerified email at telecom.pt
Andreas SchlickerResearch Scientist Bioinformatics, Bayer Pharma AGVerified email at bayer.com
Tiago GregoUniversity of CambridgeVerified email at cam.ac.uk
João D FerreiraLASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de LisboaVerified email at fc.ul.pt
Paulo Esteves-VerissimoProfessor of Computer Science, KAUSTVerified email at kaust.edu.sa
Mário J. SilvaProfessor of Computer Science and Engineering at IST, Portugal; Senior Researcher at INESC-ID LisboaVerified email at tecnico.ulisboa.pt

Daniel Faria

LASIGE, Departamento de Informática, Faculdade de Ciências, Universidade de Lisboa

Verified email at tecnico.ulisboa.pt

Bioinformatics Data Management Knowledge Engineering Semantic Web


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Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS comput biol 5 (7), e1000443, 2009	822	2009
Dynamic modularity in protein interaction networks predicts breast cancer outcome IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ... Nature biotechnology 27 (2), 199-204, 2009	773	2009
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9 (5), 1-16, 2008	356	2008
The AgreementMakerLight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto OTM Confederated International Conferences, 527-541, 2013	239	2013
Evaluating GO-based semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcao, F Couto Proc. 10th Annual Bio-Ontologies Meeting 37 (40), 38, 2007	130	2007
Results of the ontology alignment evaluation initiative 2014 Z Dragisic, K Eckert, J Euzenat, D Faria, A Ferrara, RL Granada, ... 11th International Workshop on Ontology Matching co-located with the 13th …, 2014	98	2014
User validation in ontology alignment Z Dragisic, V Ivanova, P Lambrix, D Faria, E Jiménez-Ruiz, C Pesquita International Semantic Web Conference, 200-217, 2016	85	2016
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015	72	2015
Results of the ontology alignment evaluation initiative 2016 M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... OM: Ontology matching, 73-129, 2016	69	2016
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009	66	2009
Results of the ontology alignment evaluation initiative 2015 M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, G Flouris, ... 10th ISWC workshop on ontology matching (OM), 60-115, 2015	62	2015
AgreementMakerLight Results for OAEI 2014 D Faria, C Martins, A Nanavaty, A Taheri, C Pesquita, E Santos, IF Cruz, ... Ontology Matching Workshop, 105-112, 2014	62	2014
AgreementMakerLight Results for OAEI 2013 D Faria, C Pesquita, E Santos, IF Cruz, FM Couto Ontology Matching Workshop 1111, 101-108, 2013	62	2013
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume, 2013	59	2013
Results of the ontology alignment evaluation initiative 2017 M Achichi, M Cheatham, Z Dragisic, J Euzenat, D Faria, A Ferrara, ... OM@ ISWC, 2017	47	2017
Mining GO annotations for improving annotation consistency D Faria, A Schlicker, C Pesquita, H Bastos, AEN Ferreira, M Albrecht, ... PloS one 7 (7), e40519, 2012	43	2012
Automatic background knowledge selection for matching biomedical ontologies D Faria, C Pesquita, E Santos, IF Cruz, FM Couto PloS one 9 (11), e111226, 2014	41	2014
Results of the ontology alignment evaluation initiative 2018 A Algergawy, M Cheatham, D Faria, A Ferrara, I Fundulaki, I Harrow, ... 13th International Workshop on Ontology Matching co-located with the 17th …, 2018	39	2018
OAEI 2016 results of AML D Faria, C Pesquita, BS Balasubramani, C Martins, J Cardoso, H Curado, ... 11th international workshop on ontology matching co-located with the 15th …, 2016	37	2016
Proteinon: A web tool for protein semantic similarity D Faria, C Pesquita, FM Couto, A Falcão Department of Informatics, University of Lisbon, 2007	35	2007

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