Irwin Jungreis
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787, 2010
GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...
Nucleic acids research 47 (D1), D766-D773, 2019
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
MF Lin, I Jungreis, M Kellis
Bioinformatics 27 (13), i275-i282, 2011
Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes
DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ...
Science 347 (6217), 2015
Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone
DJ Park, G Dudas, S Wohl, A Goba, SLM Whitmer, KG Andersen, ...
Cell 161 (7), 1516-1526, 2015
Evidence of abundant stop codon readthrough in Drosophila and other metazoa
I Jungreis, MF Lin, R Spokony, CS Chan, N Negre, A Victorsen, KP White, ...
Genome research 21 (12), 2096-2113, 2011
Evidence of efficient stop codon readthrough in four mammalian genes
G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ...
Nucleic acids research 42 (14), 8928-8938, 2014
Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue
J Ma, CC Ward, I Jungreis, SA Slavoff, AG Schwaid, J Neveu, BA Budnik, ...
Journal of proteome research 13 (3), 1757-1765, 2014
Improved identification and analysis of small open reading frame encoded polypeptides
J Ma, JK Diedrich, I Jungreis, C Donaldson, J Vaughan, M Kellis, ...
Analytical chemistry 88 (7), 3967-3975, 2016
Evolutionary dynamics of abundant stop codon readthrough
I Jungreis, CS Chan, RM Waterhouse, G Fields, MF Lin, M Kellis
Molecular biology and evolution 33 (12), 3108-3132, 2016
Loose ends: almost one in five human genes still have unresolved coding status
F Abascal, D Juan, I Jungreis, L Martinez, M Rigau, JM Rodriguez, ...
Nucleic acids research 46 (14), 7070-7084, 2018
Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response
G Loughran, I Jungreis, I Tzani, M Power, RI Dmitriev, IP Ivanov, M Kellis, ...
Journal of Biological Chemistry 293 (12), 4434-4444, 2018
FRESCo: finding regions of excess synonymous constraint in diverse viruses
RS Sealfon, MF Lin, I Jungreis, MY Wolf, M Kellis, PC Sabeti
Genome biology 16 (1), 1-14, 2015
A method for proving that monotone twist maps have no invariant circles
I Jungreis
Ergodic Theory and Dynamical Systems 11 (1), 79-84, 1991
Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate
C Iserman, C Roden, M Boerneke, R Sealfon, G McLaughlin, I Jungreis, ...
BioRxiv, 2020
Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci
JM Mudge, I Jungreis, T Hunt, JM Gonzalez, JC Wright, M Kay, ...
Genome research 29 (12), 2073-2087, 2019
The uniformization of the complement of the Mandelbrot set
I Jungreis
Duke Mathematical Journal 52 (4), 935-938, 1985
Genomic RNA elements drive phase separation of the SARS-CoV-2 nucleocapsid
C Iserman, CA Roden, MA Boerneke, RSG Sealfon, GA McLaughlin, ...
Molecular cell 80 (6), 1078-1091. e6, 2020
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