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Daniel Dimitrov
Daniel Dimitrov
Dirección de correo verificada de uni-heidelberg.de
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Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics 24 (8), 550-572, 2023
2542023
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
217*2022
decoupleR: ensemble of computational methods to infer biological activities from omics data
P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ...
Bioinformatics Advances 2 (1), vbac016, 2022
1632022
How will artificial intelligence and bioinformatics change our understanding of IgA Nephropathy in the next decade?
RD Bülow, D Dimitrov, P Boor, J Saez-Rodriguez
Seminars in Immunopathology 43 (5), 739-752, 2021
242021
LIANA+: an all-in-one cell-cell communication framework
D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ...
BioRxiv, 2023.08. 19.553863, 2023
92023
BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
D Dimitrov, Q Gu
PeerJ 8, e10469, 2020
92020
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
ROR Flores, JD Lanzer, D Dimitrov, B Velten, J Saez-Rodriguez
Elife 12, e93161, 2023
82023
Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples
HM Baghdassarian, D Dimitrov, E Armingol, J Saez-Rodriguez, NE Lewis
Cell Reports Methods 4 (4), 2024
52024
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
PSL Schäfer, D Dimitrov, EJ Villablanca, J Saez-Rodriguez
Nature Immunology, 1-13, 2024
12024
Defining and benchmarking open problems in single-cell analysis
MD Luecken, S Gigante, DB Burkhardt, R Cannoodt, DC Strobl, ...
Research Square, 2024
2024
Clarifying the murk: Unveiling bacterial dynamics in response to crude oil pollution, Corexit-dispersant, and natural sunlight in the Gulf of Mexico
S Matallana-Surget, LM Nigro, LA Waidner, P Lebaron, R Wattiez, ...
Frontiers in Marine Science, 2024
2024
MetalinksDB: a flexible and contextualizable resource of metabolite-protein interactions
EB Farr, D Dimitrov, D Turei, C Schmidt, S Lobentanzer, A Dugourd, ...
bioRxiv, 2023.12. 30.573715, 2023
2023
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