Richard Neher
Richard Neher
Verified email at unibas.ch - Homepage
Title
Cited by
Cited by
Year
Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
6272018
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.
M Salathé, CL Althaus, R Neher, S Stringhini, E Hodcroft, J Fellay, ...
Swiss medical weekly 150 (11-12), w20225-, 2020
2412020
TreeTime: maximum likelihood phylodynamic analysis
P Sagulenko, V Puller, R Neher
bioRxiv, 153494, 2017
1822017
Recombination rate and selection strength in HIV intra-patient evolution
RA Neher, T Leitner
PLoS computational biology 6 (1), e1000660, 2010
1822010
Population genomics of intrapatient HIV-1 evolution
F Zanini, J Brodin, L Thebo, C Lanz, G Bratt, J Albert, RA Neher
eLife 4, e11282, 2016
1652016
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss Medical Weekly 150 (1112), 2020
1642020
2019-novel Coronavirus (2019-nCoV): estimating the case fatality rate–a word of caution
M Battegay, R Kuehl, S Tschudin-Sutter, HH Hirsch, AF Widmer, ...
Swiss Medical Weekly 150 (0506), 2020
1642020
Genealogies of rapidly adapting populations
RA Neher, O Hallatschek
Proceedings of the National Academy of Sciences 110 (2), 437-442, 2013
1602013
Optimizing imaging parameters for the separation of multiple labels in a fluorescence image
R Neher, E Neher
Journal of microscopy 213 (1), 46-62, 2004
1362004
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
RA Neher, T Bedford, RS Daniels, CA Russell, BI Shraiman
Proceedings of the National Academy of Sciences 113 (12), E1701-E1709, 2016
1252016
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell, 2020
123*2020
Predicting evolution from the shape of genealogical trees
RA Neher, CA Russell, BI Shraiman
eLife 3, e03568, 2014
1202014
Genetic draft, selective interference, and population genetics of rapid adaptation
RA Neher
Annual review of Ecology, evolution, and Systematics 44, 195-215, 2013
1182013
Blind source separation techniques for the decomposition of multiply labeled fluorescence images
RA Neher, M Mitkovski, F Kirchhoff, E Neher, FJ Theis, A Zeug
Biophysical journal 96 (9), 3791-3800, 2009
1182009
panX: pan-genome analysis and exploration
W Ding, F Baumdicker, RA Neher
Nucleic Acids Research 46 (1), e5-e5, 2017
1082017
nextflu: real-time tracking of seasonal influenza virus evolution in humans
RA Neher, T Bedford
Bioinformatics 31 (21), 3546-3548, 2015
1032015
Rate of adaptation in large sexual populations
RA Neher, BI Shraiman, DS Fisher
Genetics 184 (2), 467-481, 2010
1022010
Competition between recombination and epistasis can cause a transition from allele to genotype selection
RA Neher, BI Shraiman
Proceedings of the National Academy of Sciences 106 (16), 6866-6871, 2009
1002009
Cryptic transmission of SARS-CoV-2 in Washington State
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
medRxiv, 2020
842020
Statistical genetics and evolution of quantitative traits
RA Neher, BI Shraiman
Reviews of Modern Physics 83 (4), 1283, 2011
822011
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