Dominique Schneider

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Richard LenskiMicrobiology Evolution Ecology BEACON, Michigan State UniversityVerified email at msu.edu
Jeffrey E. BarrickDepartment of Molecular Biosciences, The University of Texas at AustinVerified email at cm.utexas.edu
Olivier TenaillonUniversité de Paris, University Paris Nord, INSERM , Professor Ecole PolytechniqueVerified email at inserm.fr
Claudine MEDIGUECEA/IG/Genoscope & CNRS UMR8030Verified email at genoscope.cns.fr
Stéphane CruveillerChercheur CEAVerified email at genoscope.cns.fr
Michel PageINRIA Grenoble, FranceVerified email at iae-grenoble.fr
Aurélien DommergueUniv Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Sébastien WielgossResearch assistant, ETH Zürich, Institute of Integrative Biology, Lab for Evolutionary BiologyVerified email at env.ethz.ch
Gregory BattINRIA and Institut PasteurVerified email at inria.fr
Tim F CooperSchool of Natural and Computational Sciences, Massey UniversityVerified email at massey.ac.nz
Jessica PlucainLife Sciences Switzerland LS2Verified email at ls2.ch
Le Gac MickaelResearcher, Ifremer Brest, FranceVerified email at ifremer.fr
Guillaume Beslonprofessor at insa-lyonVerified email at inria.fr
Carole KnibbeAssociate Professor in Computational Biology, INSA Lyon, FranceVerified email at insa-lyon.fr
Sung Ho YoonDepartment of Systems Biotechnology, Konkuk UniversityVerified email at konkuk.ac.kr
Jihyun F. KimDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei UniversityVerified email at yonsei.ac.kr
MarusczakGeosciences Environnement ToulouseVerified email at get.obs-mip.fr
Vaughn CooperUniversity of Pittsburgh, Department of Microbiology and Molecular GeneticsVerified email at pitt.edu
Daniel RozenLeiden UniversityVerified email at biology.leidenuniv.nl
Tom FerenciSOLES, University of SydneyVerified email at sydney.edu.au

Dominique Schneider

Professor in Molecular Evolution, University Joseph Fourier Grenoble

Verified email at univ-grenoble-alpes.fr

Experimental evolution evolutionary trajectories epistasis adaptive diversification genomics and regulatory networks


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Genome evolution and adaptation in a long-term experiment with Escherichia coli JE Barrick, DS Yu, SH Yoon, H Jeong, TK Oh, D Schneider, RE Lenski, ... Nature 461 (7268), 1243-1247, 2009	1212	2009
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths M Touchon, C Hoede, O Tenaillon, V Barbe, S Baeriswyl, P Bidet, ... PLoS Genet 5 (1), e1000344, 2009	1107	2009
Negative epistasis between beneficial mutations in an evolving bacterial population AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper Science 332 (6034), 1193-1196, 2011	499	2011
Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria N Philippe, JP Alcaraz, E Coursange, J Geiselmann, D Schneider Plasmid 51 (3), 246-255, 2004	388	2004
Genomic evolution during a 10,000-generation experiment with bacteria D Papadopoulos, D Schneider, J Meier-Eiss, W Arber, RE Lenski, M Blot Proceedings of the National Academy of Sciences 96 (7), 3807-3812, 1999	334	1999
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli R Woods, D Schneider, CL Winkworth, MA Riley, RE Lenski Proceedings of the National Academy of Sciences 103 (24), 9107-9112, 2006	325	2006
Tempo and mode of genome evolution in a 50,000-generation experiment O Tenaillon, JE Barrick, N Ribeck, DE Deatherage, JL Blanchard, ... bioRxiv, 036806, 2016	316	2016
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B VS Cooper, D Schneider, M Blot, RE Lenski Journal of Bacteriology 183 (9), 2834-2841, 2001	302	2001
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ... Bioinformatics 21 (suppl 1), i19-i28, 2005	232	2005
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load S Wielgoss, JE Barrick, O Tenaillon, MJ Wiser, WJ Dittmar, S Cruveiller, ... Proceedings of the National Academy of Sciences 110 (1), 222-227, 2013	224	2013
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements D Schneider, E Duperchy, E Coursange, RE Lenski, M Blot Genetics 156 (2), 477-488, 2000	181	2000
Dynamics of insertion sequence elements during experimental evolution of bacteria D Schneider, RE Lenski Research in microbiology 155 (5), 319-327, 2004	180	2004
Qualitative simulation of the carbon starvation response in Escherichia coli D Ropers, H De Jong, M Page, D Schneider, J Geiselmann Biosystems 84 (2), 124-152, 2006	168	2006
Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli S Wielgoss, JE Barrick, O Tenaillon, S Cruveiller, B Chane-Woon-Ming, ... G3: Genes, Genomes, Genetics 1 (3), 183-186, 2011	165	2011
Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection E Crozat, N Philippe, RE Lenski, J Geiselmann, D Schneider Genetics 169 (2), 523-532, 2005	165	2005
New insights into bacterial adaptation through in vivo and in silico experimental evolution T Hindré, C Knibbe, G Beslon, D Schneider Nature Reviews Microbiology 10 (5), 352-365, 2012	161	2012
Evolution of global regulatory networks during a long‐term experiment with Escherichia coli N Philippe, E Crozat, RE Lenski, D Schneider Bioessays 29 (9), 846-860, 2007	155	2007
Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli L Pelosi, L Kühn, D Guetta, J Garin, J Geiselmann, RE Lenski, ... Genetics 173 (4), 1851-1869, 2006	132	2006
Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila X Charpentier, E Kay, D Schneider, HA Shuman Journal of bacteriology 193 (5), 1114-1121, 2011	122	2011
Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli J Plucain, T Hindré, M Le Gac, O Tenaillon, S Cruveiller, C Médigue, ... Science 343 (6177), 1366-1369, 2014	120	2014

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