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Christophe Avenel
Christophe Avenel
Bioinformatician, SciLifeLab, NBIS, NMISweden, Uppsala University
Dirección de correo verificada de it.uu.se - Página principal
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Año
Morphological features extracted by AI associated with spatial transcriptomics in prostate cancer
E Chelebian, C Avenel, K Kartasalo, M Marklund, A Tanoglidi, T Mirtti, ...
Cancers 13 (19), 4837, 2021
222021
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
A Sountoulidis, S Marco Salas, E Braun, C Avenel, J Bergenstråhle, ...
Nature Cell Biology 25 (2), 351-365, 2023
212023
Tracking closed curves with non-linear stochastic filters
C Avenel, E Mémin, P Pérez
International Conference on Scale Space and Variational Methods in Computer …, 2009
192009
Stochastic level set dynamics to track closed curves through image data
C Avenel, E Mémin, P Pérez
Journal of mathematical imaging and vision 49, 296-316, 2014
162014
TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
N Pielawski, A Andersson, C Avenel, A Behanova, E Chelebian, A Klemm, ...
Heliyon 9 (5), 2023
142023
Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows
SM Salas, P Czarnewski, LB Kuemmerle, S Helgadottir, ...
BioRxiv, 2023.02. 13.528102, 2023
142023
Marked point processes with simple and complex shape objects for cell nuclei extraction from breast cancer H&E images
C Avenel, MS Kulikova
Medical Imaging 2013: Digital Pathology 8676, 312-318, 2013
132013
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin
X Li, Z Andrusivova, P Czarnewski, CM Langseth, A Andersson, Y Liu, ...
Nature neuroscience 26 (5), 891-901, 2023
122023
Glandular segmentation of prostate cancer: an illustration of how the choice of histopathological stain is one key to success for computational pathology
C Avenel, A Tolf, A Dragomir, IB Carlbom
Frontiers in bioengineering and biotechnology 7, 125, 2019
122019
TissUUmaps 3: interactive visualization and quality assessment of large-scale spatial omics data
N Pielawski, A Andersson, C Avenel, A Behanova, E Chelebian, A Klemm, ...
BioRxiv, 2022
92022
Parallel birth and death process for cell nuclei extraction in histopathology images
C Avenel, P Fortin, D Béréziat
2013 42nd International Conference on Parallel Processing, 429-438, 2013
82013
The Giga-pixel Challenge: Full Resolution Image Analysis–Without Losing the Big Picture: An open-source approach for multi-scale analysis and visualization of slide-scanner data
P Ranefall, A Pacureanu, C Avenel, AE Carpenter, C Wählby
SSBA 2014, Symposium of the Swedish Society for Automated Image Analysis, 10 …, 2014
7*2014
Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3
A Behanova, C Avenel, A Andersson, E Chelebian, A Klemm, L Wik, ...
Biological Imaging 3, e6, 2023
3*2023
Single cell-resolution in situ sequencing elucidates spatial dynamics of multiple sclerosis lesion and disease evolution
CM Langseth, P Kukanja, LAR Rodríguez-Kirby, E Agirre, A Raman, ...
bioRxiv, 2023.06. 29.547074, 2023
22023
Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
T Bekkhus, C Avenel, S Hanna, M Franzén Boger, A Klemm, DV Bacovia, ...
The Journal of Pathology 258 (1), 4-11, 2022
22022
Developmental origins of cell heterogeneity in the human lung
A Sountoulidis, SM Salas, E Braun, C Avenel, J Bergenstråhle, M Vicari, ...
BioRXiv, 2022.01. 11.475631, 2022
22022
Points2regions: Fast interactive clustering of in situ transcriptomics data
A Andersson, A Behanova, C Avenel, C Wählby, F Malmberg
bioRxiv, 2022
22022
Picro-Sirius-HTX stain for blind color decomposition of histopathological prostate tissue
IB Carlbom, C Avenel, C Busch
2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI), 282-285, 2014
22014
Tracking level set representation driven by a stochastic dynamics
C Avenel, E Mémin, P Pérez
Curves and Surfaces: 7th International Conference, Avignon, France, June 24 …, 2012
22012
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology
P Kukanja, CM Langseth, LAR Rodríguez-Kirby, E Agirre, C Zheng, ...
Cell 187 (8), 1990-2009. e19, 2024
12024
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Artículos 1–20