Carolina Wählby
Carolina Wählby
Professor of Quantitative Microscopy, Dept. Information Technology, Uppsala University, and Broad Institute of Harvard and MIT
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Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
C Wählby, IM Sintorn, F Erlandsson, G Borgefors, E Bengtsson
Journal of microscopy 215 (1), 67-76, 2004
3392004
In situ sequencing for RNA analysis in preserved tissue and cells
R Ke, M Mignardi, A Pacureanu, J Svedlund, J Botling, C Wählby, ...
Nature methods 10 (9), 857, 2013
3112013
In situ detection of phosphorylated platelet-derived growth factor receptor β using a generalized proximity ligation method
M Jarvius, J Paulsson, I Weibrecht, KJ Leuchowius, AC Andersson, ...
Molecular & cellular proteomics 6 (9), 1500-1509, 2007
2602007
Algorithms for cytoplasm segmentation of fluorescence labelled cells
C Wählby, J Lindblad, M Vondrus, E Bengtsson, L Björkesten
Analytical Cellular Pathology 24 (2-3), 101-111, 2002
1882002
BlobFinder, a tool for fluorescence microscopy image cytometry
A Allalou, C Wählby
Computer methods and programs in biomedicine 94 (1), 58-65, 2009
1282009
An image analysis toolbox for high-throughput C. elegans assays
C Wählby, L Kamentsky, ZH Liu, T Riklin-Raviv, AL Conery, EJ O'rourke, ...
Nature methods 9 (7), 714, 2012
1192012
Robust cell image segmentation methods
E Bengtsson, C Wahlby, J Lindblad
Pattern Recognition and Image Analysis C/c of Raspoznavaniye Obrazov i …, 2004
1092004
Pseudomonas aeruginosa disrupts Caenorhabditis elegans iron homeostasis, causing a hypoxic response and death
NV Kirienko, DR Kirienko, J Larkins-Ford, C Wählby, G Ruvkun, ...
Cell host & microbe 13 (4), 406-416, 2013
1042013
Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation
J Lindblad, C Wählby, E Bengtsson, A Zaltsman
Cytometry Part A: the journal of the International Society for Analytical …, 2004
1002004
Fully automated cellular-resolution vertebrate screening platform with parallel animal processing
TY Chang, C Pardo-Martin, A Allalou, C Wählby, MF Yanik
Lab on a Chip 12 (4), 711-716, 2012
932012
High-throughput hyperdimensional vertebrate phenotyping
C Pardo-Martin, A Allalou, J Medina, PM Eimon, C Wählby, MF Yanik
Nature communications 4 (1), 1-9, 2013
692013
Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei
C Wählby, F Erlandsson, E Bengtsson, A Zetterberg
Cytometry: The Journal of the International Society for Analytical Cytology …, 2002
652002
Blind color decomposition of histological images
M Gavrilovic, JC Azar, J Lindblad, C Wählby, E Bengtsson, C Busch, ...
IEEE transactions on medical imaging 32 (6), 983-994, 2013
582013
Seeded watersheds for combined segmentation and tracking of cells
A Pinidiyaarachchi, C Wählby
International Conference on Image Analysis and Processing, 336-343, 2005
532005
Automated training of deep convolutional neural networks for cell segmentation
SK Sadanandan, P Ranefall, S Le Guyader, C Wählby
Scientific reports 7 (1), 1-7, 2017
512017
Visualising individual sequence-specific protein–DNA interactions in situ
I Weibrecht, M Gavrilovic, L Lindbom, U Landegren, C Wählby, ...
New biotechnology 29 (5), 589-598, 2012
432012
Increasing the dynamic range of in situ PLA
CM Clausson, A Allalou, I Weibrecht, S Mahmoudi, M Farnebo, ...
Nature methods 8 (11), 892-893, 2011
432011
Bright-field microscopy visualization of proteins and protein complexes by in situ proximity ligation with peroxidase detection
A Zieba, C Wahlby, F Hjelm, L Jordan, J Berg, U Landegren, K Pardali
Clinical chemistry 56 (1), 99-110, 2010
422010
Algorithms for applied digital image cytometry
C Wählby
Acta Universitatis Upsaliensis, 2003
402003
Abnormal expression pattern of cyclin E in tumour cells
F Erlandsson, C Wählby, S Ekholm‐Reed, AC Hellström, E Bengtsson, ...
International journal of cancer 104 (3), 369-375, 2003
392003
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