Alberto J.M. Martin
Alberto J.M. Martin
Centro de Genómica y Bioinformática, Facultad de ciencias, Universidad Mayor
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ESpritz: accurate and fast prediction of protein disorder
I Walsh, AJM Martin, T Di Domenico, SCE Tosatto
Bioinformatics 28 (4), 503-509, 2012
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information
G Pollastri, AJM Martin, C Mooney, A Vullo
BMC bioinformatics 8 (1), 201, 2007
MobiDB: a comprehensive database of intrinsic protein disorder annotations
T Di Domenico, I Walsh, AJM Martin, SCE Tosatto
Bioinformatics 28 (15), 2080-2081, 2012
RING: networking interacting residues, evolutionary information and energetics in protein structures
AJM Martin, M Vidotto, F Boscariol, T Di Domenico, I Walsh, SCE Tosatto
Bioinformatics 27 (14), 2003-2005, 2011
Distill: a suite of web servers for the prediction of one-, two-and three-dimensional structural features of proteins
D Baú, AJM Martin, C Mooney, A Vullo, I Walsh, G Pollastri
BMC bioinformatics 7 (1), 402, 2006
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs
I Walsh, AJM Martin, T Di Domenico, A Vullo, G Pollastri, SCE Tosatto
Nucleic acids research 39 (suppl_2), W190-W196, 2011
NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation
M Giollo, AJM Martin, I Walsh, C Ferrari, SCE Tosatto
BMC genomics 15 (4), 1-11, 2014
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks
I Walsh, D Baù, AJM Martin, C Mooney, A Vullo, G Pollastri
BMC structural biology 9 (1), 5, 2009
Fly cryptochrome and the visual system
G Mazzotta, A Rossi, E Leonardi, M Mason, C Bertolucci, L Caccin, ...
Proceedings of the National Academy of Sciences 110 (15), 6163-6168, 2013
An integrated molecular dynamics, principal component analysis and residue interaction network approach reveals the impact of M184V mutation on HIV reverse transcriptase …
S Bhakat, AJM Martin, MES Soliman
Molecular BioSystems 10 (8), 2215-2228, 2014
MOBI: a web server to define and visualize structural mobility in NMR protein ensembles
AJM Martin, I Walsh, SCE Tosatto
Bioinformatics 26 (22), 2916-2917, 2010
Multi-drug resistance profile of PR20 HIV-1 protease is attributed to distorted conformational and drug binding landscape: molecular dynamics insights
S Chetty, S Bhakat, AJM Martin, MES Soliman
Journal of Biomolecular Structure and Dynamics 34 (1), 135-151, 2016
Ab initio and homology based prediction of protein domains by recursive neural networks
I Walsh, AJM Martin, C Mooney, E Rubagotti, A Vullo, G Pollastri
BMC bioinformatics 10 (1), 195, 2009
Graphlet Based Metrics for the Comparison of Gene Regulatory Networks
TPA Alberto J. M. Martin , Calixto Dominguez, Sebastián Contreras-Riquelme ...
PLOS one, 2016
PANADA: protein association network annotation, determination and analysis
AJM Martin, I Walsh, T Di Domenico, I Mičetić, SCE Tosatto
PLoS One 8 (11), e78383, 2013
On biophysical properties and sensitivity to gap junction blockers of connexin 39 hemichannels expressed in HeLa cells
AA Vargas, BA Cisterna, F Saavedra-Leiva, C Urrutia, LA Cea, AH Vielma, ...
Frontiers in physiology 8, 38, 2017
RIP-MD: a tool to study residue interaction networks in protein molecular dynamics
S Contreras-Riquelme, JA Garate, T Perez-Acle, AJM Martin
PeerJ 6, e5998, 2018
Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach
T Perez-Acle, I Fuenzalida, AJM Martin, R Santibañez, R Avaria, ...
Biochemical and biophysical research communications 498 (2), 342-351, 2018
Rule-based models and applications in biology
Á Bustos, I Fuenzalida, R Santibáñez, T Pérez-Acle, AJM Martin
Computational Cell Biology, 3-32, 2018
Long-range information and physicality constraints improve predicted protein contact maps
AJM Martin, D Bau, A Vullo, I Walsh, G Pollastri
Journal of Bioinformatics and Computational Biology 6 (05), 1001-1020, 2008
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