Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors F Carazo, JP Romero, A Rubio Briefings in Bioinformatics 20 (4), 1358-1375, 2019 | 35 | 2019 |
Comparison of RNA-seq and microarray platforms for splice event detection using a cross-platform algorithm JP Romero, M Ortiz-Estévez, A Muniategui, S Carrancio, FJ de Miguel, ... BMC genomics 19, 1-14, 2018 | 31 | 2018 |
Explainable artificial intelligence for precision medicine in acute myeloid leukemia M Gimeno, E San José-Enériz, S Villar, X Agirre, F Prosper, A Rubio, ... Frontiers in Immunology 13, 977358, 2022 | 23 | 2022 |
Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data F Carazo, M Gimeno, JA Ferrer-Bonsoms, A Rubio BMC genomics 20, 1-11, 2019 | 15 | 2019 |
SOX9 triggers different epithelial to mesenchymal transition states to promote pancreatic cancer progression E Carrasco-Garcia, L Lopez, V Moncho-Amor, F Carazo, P Aldaz, ... Cancers 14 (4), 916, 2022 | 12 | 2022 |
ISOGO: Functional annotation of protein-coding splice variants JA Ferrer-Bonsoms, I Cassol, P Fernández-Acín, C Castilla, F Carazo, ... Scientific reports 10 (1), 1069, 2020 | 10 | 2020 |
Identifying lethal dependencies with HUGE predictive power M Gimeno, E San José-Enériz, A Rubio, L Garate, E Miranda, C Castilla, ... Cancers 14 (13), 3251, 2022 | 9 | 2022 |
DrugSniper, a Tool to Exploit Loss-Of-Function Screens, Identifies CREBBP as a Predictive Biomarker of VOLASERTIB in Small Cell Lung Carcinoma (SCLC) F Carazo, C Bértolo, C Castilla, X Cendoya, L Campuzano, D Serrano, ... Cancers 12 (7), 1824, 2020 | 9 | 2020 |
Analysis of temperature and pH shifts on the impedance characteristic using interdigitated microelectrode based sensors for industrial applications I Tubia, F Carazo, A Apezteguia, E Perez-Lorenzo, J Paredes, S Arana Sensors and Actuators A: Physical 277, 1-7, 2018 | 7 | 2018 |
EventPointer 3.0: flexible and accurate splicing analysis that includes studying the differential usage of protein-domains JA Ferrer-Bonsoms, M Gimeno, D Olaverri, P Sacristan, C Lobato, ... NAR Genomics and Bioinformatics 4 (3), lqac067, 2022 | 5 | 2022 |
TranscriptAchilles: A genome-wide platform to predict isoform biomarkers of gene essentiality in cancer F Carazo, L Campuzano, X Cendoya, FJ Planes, A Rubio GigaScience 8 (4), giz021, 2019 | 5 | 2019 |
DeepRBP: A novel deep neural network for inferring splicing regulation JA Ferrer-Bonsoms, D Olaverri-Mendizabal, F Carazo, LV Valcarcel, ... | | 2024 |
DeepRBP: A novel deep neural network for inferring splicing regulation J Sancho Zamora, JA Ferrer-Bonsoms, D Olaverri-Mendizabal, F Carazo, ... bioRxiv, 2024.04. 11.589004, 2024 | | 2024 |
Identifying Lethal Dependencies with HUGE Predictive Power from Large-Scale Functional Genomic Screens F Carazo, ES José-Enériz, M Gimeno, L Garate, E Miranda, C Castilla, ... bioRxiv, 2021.10. 29.466419, 2021 | | 2021 |
A Computational Based Approach for Identification and Validation of Gene Mutations As Surrogate Markers of Gene Essentiality in Acute Myeloid Leukemia F Carazo, E San Jose, L Garate, E Miranda, AA Pierola, S Villar, ... Blood 134, 1414, 2019 | | 2019 |
GENE MUTATIONS AS A SUBROGATED MARKER OF GENE ESSENTIALITY AND NEW THERAPEUTIC TARGETS FOR MYELOBLASTIC ACUTE LEUKEMIA F Carazo, E San Jose-Eneriz, L Garate, E Miranda, A Rubio, X Agirre, ... HAEMATOLOGICA 104, 49-49, 2019 | | 2019 |
Computational analysis of alternative splicing: a novel algorithm to predict context-specific splicing factors and a statistical web application for precisión medicine in cancer FJ Carazo Melo Computational analysis of alternative splicing: a novel algorithm to predict …, 2019 | | 2019 |
TranscriptAchilles: a genome-wide platform to predict transcript biomarkers and drug target genes in cancer F Carazo, L Campuzano, X Cendoya, FJ Planes, A Rubio | | |