Toni Gabaldon

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Marina Marcet-HoubenBSCVerified email at bsc.es
Salvador Capella-GutiérrezBarcelona Supercomputing Centre (BSC)Verified email at bsc.es
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA-CSIC), Madrid, SpainVerified email at embl.de
Leszek PryszczCRG, BarcelonaVerified email at crg.es
Martijn HuynenCMBI, Radboud University Medical CentreVerified email at radboudumc.nl
Ewa KsiezopolskaVerified email at crg.eu
Attila GacserUniversity of Szeged, Department of MicrobiologyVerified email at bio.u-szeged.hu
Joaquin DopazoHead of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, SpainVerified email at juntadeandalucia.es
Miguel Ángel Naranjo OrtizPostdoctoral researcherVerified email at clarku.edu
teun boekhoutCBS Fungal Biodiversity CentreVerified email at cbs.knaw.nl
Jozef NosekProfessor of Biochemistry, Comenius University in Bratislava, SlovakiaVerified email at uniba.sk
Alexandros A PittisEuropean Molecular Biology Laboratory (EMBL)Verified email at embl.de
Christophe DessimozProfessor at UNIL and UCLVerified email at ucl.ac.uk
Cinta Pegueroles QueraltUniversitat de Barcelona, UBVerified email at ub.edu
Sofia K. ForslundJunior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), BerlinVerified email at embl.de
Laia Carreté, PhDUniversitat de BarcelonaVerified email at uoc.edu
Roderic GuigoProfessor of Bioinformatics, Center for Genomic Regulation, Universitat Pompeu FabraVerified email at crg.cat
Pedro González-TorresPostDoc position, Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG)Verified email at crg.eu
Irene JulcaNanyang Technological University (NTU)Verified email at ntu.edu.sg
Fran SupekGenome Data Science (group leader), IRB Barcelona; ICREA Research ProfessorVerified email at irb.hr

Toni Gabaldon

Group Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)

Verified email at crg.es - Homepage

Evolution Phylogenomics Bioinformatics Phylogenetics Genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses S Capella-Gutiérrez, JM Silla-Martínez, T Gabaldón Bioinformatics 25 (15), 1972-1973, 2009	5219	2009
Coronavirus disease 2019 (COVID-19): emerging and future challenges for dental and oral medicine R Bescos, P Casas-Agustench, L Belfield, Z Brookes, T Gabaldón Journal of Dental Research 99 (9), 1113-1113, 2020	2086*	2020
Whole-genome analyses resolve early branches in the tree of life of modern birds ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ... Science 346 (6215), 1320-1331, 2014	1588	2014
Genome Sequence of the Pea Aphid Acyrthosiphon pisum International Aphid Genomics Consortium PLoS biology 8 (2), e1000313, 2010	890	2010
The genome of melon (Cucumis melo L.) J Garcia-Mas, A Benjak, W Sanseverino, M Bourgeois, G Mir, ... Proceedings of the National Academy of Sciences 109 (29), 11872-11877, 2012	615	2012
Synonymous mutations frequently act as driver mutations in human cancers F Supek, B Miñana, J Valcárcel, T Gabaldón, B Lehner Cell 156 (6), 1324-1335, 2014	492	2014
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	478	2014
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) JC Dohm, AE Minoche, D Holtgräwe, S Capella-Gutiérrez, F Zakrzewski, ... Nature 505 (7484), 546-549, 2014	470	2014
Functional and evolutionary implications of gene orthology T Gabaldón, EV Koonin Nature Reviews Genetics 14 (5), 360-366, 2013	450	2013
Immunity and other defenses in pea aphids, Acyrthosiphon pisum NM Gerardo, B Altincicek, C Anselme, H Atamian, SM Barribeau, ... Genome biology 11 (2), 1-17, 2010	428	2010
ETE: a python Environment for Tree Exploration J Huerta-Cepas, J Dopazo, T Gabaldón BMC bioinformatics 11 (1), 1-7, 2010	410	2010
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016	324	2016
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida J Collén, B Porcel, W Carré, SG Ball, C Chaparro, T Tonon, T Barbeyron, ... Proceedings of the National Academy of Sciences 110 (13), 5247-5252, 2013	313	2013
Redundans: an assembly pipeline for highly heterozygous genomes LP Pryszcz, T Gabaldón Nucleic acids research 44 (12), e113-e113, 2016	309	2016
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014	305	2014
The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment i5K Consortium Journal of Heredity 104 (5), 595-600, 2013	301	2013
An anaerobic mitochondrion that produces hydrogen B Boxma, RM de Graaf, GWM van der Staay, TA van Alen, G Ricard, ... Nature 434 (7029), 74-79, 2005	275	2005
Beyond the whole-genome duplication: phylogenetic evidence for an ancient interspecies hybridization in the baker's yeast lineage M Marcet-Houben, T Gabaldón PLoS biology 13 (8), e1002220, 2015	268	2015
Tracing the evolution of a large protein complex in the eukaryotes, NADH: ubiquinone oxidoreductase (Complex I) T Gabaldón, D Rainey, MA Huynen Journal of molecular biology 348 (4), 857-870, 2005	256	2005
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome J Huerta-Cepas, S Capella-Gutierrez, LP Pryszcz, M Marcet-Houben, ... Nucleic acids research 42 (D1), D897-D902, 2014	228	2014

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