Mala L Radhakrishnan
Mala L Radhakrishnan
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Manipulation of magnetic microbeads in suspension using micromagnetic systems fabricated with soft lithography
T Deng, GM Whitesides, M Radhakrishnan, G Zabow, M Prentiss
Applied physics letters 78 (12), 1775-1777, 2001
Direct dynamics for free radical kinetics in solution: Solvent effect on the rate constant for the reaction of methanol with atomic hydrogen
YY Chuang, ML Radhakrishnan, PL Fast, CJ Cramer, DG Truhlar
The Journal of Physical Chemistry A 103 (25), 4893-4909, 1999
Defining Cdk5 ligand chemical space with small molecule inhibitors of tau phosphorylation
JS Ahn, ML Radhakrishnan, M Mapelli, S Choi, B Tidor, GD Cuny, ...
Chemistry & biology 12 (7), 811-823, 2005
A dual receptor crosstalk model of G-protein-coupled signal transduction
P Flaherty, ML Radhakrishnan, T Dinh, RA Rebres, TI Roach, MI Jordan, ...
PLoS computational biology 4 (9), e1000185, 2008
Specificity in molecular design: a physical framework for probing the determinants of binding specificity and promiscuity in a biological environment
ML Radhakrishnan, B Tidor
The Journal of Physical Chemistry B 111 (47), 13419-13435, 2007
Symmetric signaling by an asymmetric 1 erythropoietin: 2 erythropoietin receptor complex
YL Zhang, ML Radhakrishnan, X Lu, AW Gross, B Tidor, HF Lodish
Molecular cell 33 (2), 266-274, 2009
Optimal drug cocktail design: methods for targeting molecular ensembles and insights from theoretical model systems
ML Radhakrishnan, B Tidor
Journal of chemical information and modeling 48 (5), 1055-1073, 2008
Investigating the nucleic acid interactions of histone‐derived antimicrobial peptides
S Sim, P Wang, BN Beyer, KJ Cutrona, ML Radhakrishnan, DE Elmore
FEBS letters 591 (5), 706-717, 2017
A multifaceted analysis of HIV-1 protease multidrug resistance phenotypes
KM Doherty, P Nakka, BM King, SY Rhee, SP Holmes, RW Shafer, ...
BMC bioinformatics 12 (1), 1-19, 2011
Designing electrostatic interactions in biological systems via charge optimization or combinatorial approaches: insights and challenges with a continuum electrostatic framework
ML Radhakrishnan
Theoretical Chemistry Accounts 131 (8), 1-24, 2012
The effect of macromolecular crowding on the electrostatic component of Barnase–Barstar binding: a computational, implicit solvent-based study
HW Qi, P Nakka, C Chen, ML Radhakrishnan
PloS one 9 (6), e98618, 2014
Molecular mechanisms and design principles for promiscuous inhibitors to avoid drug resistance: Lessons learned from HIV‐1 protease inhibition
Y Shen, ML Radhakrishnan, B Tidor
Proteins: Structure, Function, and Bioinformatics 83 (2), 351-372, 2015
Multiple drugs and multiple targets: An analysis of the electrostatic determinants of binding between non‐nucleoside HIV‐1 reverse transcriptase inhibitors and variants of HIV‐1 RT
MS Minkara, PH Davis, ML Radhakrishnan
Proteins: Structure, Function, and Bioinformatics 80 (2), 573-590, 2012
Dead-end elimination as a heuristic for min-cut image segmentation
ML Radhakrishnan, SL Su
2006 International Conference on Image Processing, 2429-2432, 2006
Effect of the spiroiminodihydantoin lesion on nucleosome stability and positioning
EM Norabuena, S Barnes Williams, MA Klureza, LJ Goehring, ...
Biochemistry 55 (16), 2411-2421, 2016
Perspectives: The chemistry between us
ML Radhakrishnan
Chemical & Engineering News 95 (1), 30-31, 2017
Tackling the bigger picture in computational drug design: theory, methods, and application to HIV-1 protease and erythropoietin systems
ML Radhakrishnan
Massachusetts Institute of Technology, 2007
Computationally Modeling Electrostatic Binding Energetics in a Crowded, Dynamic Environment: Physical Insights from a Peptide–DNA System
CP Perez, DE Elmore, ML Radhakrishnan
The Journal of Physical Chemistry B 123 (50), 10718-10734, 2019
The Quantum Mechanics of a Rolling Molecular “Nanocar”
OE Fernandez, ML Radhakrishnan
Scientific reports 8 (1), 1-11, 2018
Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding
AB Kreienkamp, LY Liu, MS Minkara, MG Knepley, JP Bardhan, ...
Computational and Mathematical Biophysics 1 (2013), 124-150, 2013
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