Yang Ruan
Yang Ruan
PhD of Computer Science, Indiana University
Verified email at indiana.edu
Title
Cited by
Cited by
Year
Hybrid cloud and cluster computing paradigms for life science applications
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ...
BMC bioinformatics 11 (12), 1-6, 2010
962010
Improving resource utilization in mapreduce
Z Guo, G Fox, M Zhou, Y Ruan
2012 IEEE International Conference on Cluster Computing, 402-410, 2012
542012
Applying twister to scientific applications
B Zhang, Y Ruan, TL Wu, J Qiu, A Hughes, G Fox
2010 IEEE Second International Conference on Cloud Computing Technology and …, 2010
512010
Harp: Collective communication on hadoop
B Zhang, Y Ruan, J Qiu
2015 IEEE International Conference on Cloud Engineering, 228-233, 2015
432015
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
282012
Data intensive computing for bioinformatics
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ...
Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012
242012
Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions
Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
222014
Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering
GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ...
Applied and environmental microbiology 82 (16), 4921-4930, 2016
212016
A robust and scalable solution for interpolative multidimensional scaling with weighting
Y Ruan, G Fox
2013 IEEE 9th International Conference on e-Science, 61-69, 2013
192013
Applicability of DryadLINQ to scientific applications
J Ekanayake, T Gunarathne, J Qiu, G Fox, S Beason, JY Choi, Y Ruan, ...
Community Grids Laboratory, Indiana University, 2009
182009
Visualizing the protein sequence universe
L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ...
Proceedings of the 3rd international workshop on Emerging computational …, 2012
152012
Hymr: a hybrid mapreduce workflow system
Y Ruan, Z Guo, Y Zhou, J Qiu, G Fox
Proceedings of the 3rd international workshop on Emerging computational …, 2012
122012
Design patterns for scientific applications in DryadLINQ CTP
H Li, Y Ruan, Y Zhou, J Qiu, G Fox
Proceedings of the second international workshop on Data intensive computing …, 2011
112011
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets
A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox
BMC bioinformatics 13 (2), 1-6, 2012
102012
Map-reduce expansion of the ISGA genomic analysis web server
C Hemmerich, A Hughes, Y Ruan, A Buechlein, J Qiu, G Fox
IEEE CloudCom, 2010
42010
Design Patterns for Scientific Applications in DryadLINQ CTP, to appear
H Li, Y Ruan, Y Zhou, J Qiu, G Fox
in Proceedings of The Second International Workshop on Data Intensive …, 2011
32011
Salsa project: Parallel data mining of gis, web, medical, physics, chemical, and biology data
X Qiu, G Fox, SH Bae, JY Choi, J Ekanayake, Y Ruan
2008 IEEE Fourth International Conference on eScience, 335-336, 2008
22008
Scalable and robust clustering and visualization for large-scale bioinformatics data
Y Ruan
Indiana University, 2014
2014
DRYADLINQ CTP EVALUATION
CTP DryadLINQ
2011
SCALABLE AND ROBUST DIMENSION REDUCTION AND CLUSTERING
Y Ruan
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Articles 1–20