| SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events EN Bergstrom, MN Huang, U Mahto, M Barnes, MR Stratton, SG Rozen, ... BMC genomics 20, 1-12, 2019 | 183 | 2019 |
| Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022 | 149 | 2022 |
| Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA EN Bergstrom, J Luebeck, M Petljak, A Khandekar, M Barnes, T Zhang, ... Nature 602 (7897), 510-517, 2022 | 81 | 2022 |
| Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator EN Bergstrom, M Barnes, I Martincorena, LB Alexandrov BMC bioinformatics 21, 1-10, 2020 | 28 | 2020 |
| Topography of mutational signatures in human cancer B Otlu, M Díaz-Gay, I Vermes, EN Bergstrom, M Zhivagui, M Barnes, ... Cell reports 42 (8), 2023 | 16 | 2023 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment M Díaz-Gay, R Vangara, M Barnes, X Wang, SMA Islam, I Vermes, S Duke, ... Bioinformatics 39 (12), btad756, 2023 | 9 | 2023 |
| Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator A Khandekar, R Vangara, M Barnes, M Díaz-Gay, A Abbasi, ... BMC genomics 24 (1), 469, 2023 | 4 | 2023 |
| Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment R Vangara, M Diaz-Gay, MD Barnes, X Wang, SMA Islam, I Vermes, ... Cancer Research 84 (6_Supplement), 7415-7415, 2024 | | 2024 |
| COSMIC eSignatures: a collection of experimentally derived mutational signatures due to environmental agents M Zhivagui, M Barnes, C Ye, LB Alexandrov ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 63, 66-67, 2022 | | 2022 |
