John E. Stone
TitleCited byYear
GPU computing
JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips
Proceedings of the IEEE 96 (5), 879-899, 2008
22092008
OpenCL: A parallel programming standard for heterogeneous computing systems
JE Stone, D Gohara, G Shi
Computing in science & engineering 12 (3), 66-73, 2010
14642010
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of Computational Chemistry 28 (16), 2618-2640, 2007
7892007
GPU-accelerated molecular modeling coming of age
JE Stone, DJ Hardy, IS Ufimtsev, K Schulten
Journal of Molecular Graphics and Modelling 29 (2), 116-125, 2010
3692010
An Efficient Library for Parallel Ray Tracing and Animation
JE Stone
University of Missouri-Rolla, 1998
2811998
GPU clusters for high-performance computing
VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ...
2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009
2592009
An asymmetric distributed shared memory model for heterogeneous parallel systems
I Gelado, JE Stone, J Cabezas, S Patel, N Navarro, WW Hwu
ACM SIGARCH Computer Architecture News 38 (1), 347-358, 2010
2122010
Adapting a message-driven parallel application to GPU-accelerated clusters
JC Phillips, JE Stone, K Schulten
Proceedings of the 2008 ACM/IEEE conference on Supercomputing, 8, 2008
2032008
A system for interactive molecular dynamics simulation
JE Stone, J Gullingsrud, K Schulten
Proceedings of the 2001 symposium on Interactive 3D graphics, 191-194, 2001
1882001
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units--Radial Distribution Function Histogramming
BG Levine, JE Stone, A Kohlmeyer
Journal of Computational Physics 230 (9), 3556-3569, 2011
1372011
GPU acceleration of cutoff pair potentials for molecular modeling applications
CI Rodrigues, DJ Hardy, JE Stone, K Schulten, WMW Hwu
Proceedings of the 5th conference on Computing frontiers, 273-282, 2008
1332008
Multilevel summation of electrostatic potentials using graphics processing units
DJ Hardy, JE Stone, K Schulten
Parallel Computing 35 (3), 164-177, 2009
1272009
Using VMD: an introductory tutorial
J Hsin, A Arkhipov, Y Yin, JE Stone, K Schulten
Current protocols in bioinformatics 24 (1), 5.7. 1-5.7. 48, 2008
1102008
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories
M Krone, J Stone, T Ertl, K Schulten
EuroVis-Short Papers, 67-71, 2012
952012
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation
E Roberts, JE Stone, Z Luthey‐Schulten
Journal of Computational Chemistry 34 (3), 245-255, 2013
832013
Scientific Computing with Multicore and Accelerators
W Alvaro, J Kurzak, J Dongarra, S Tomov, R Nath, S Williams, N Bell, ...
70*
In Scientific Computing with Multicore and Accelerators
JE Stone, DJ Hardy, B Isralewitz, K Schulten
Chapman & Hall/CRC Press, 2011
69*2011
High performance computation and interactive display of molecular orbitals on GPUs and multi-core CPUs
JE Stone, J Saam, DJ Hardy, KL Vandivort, WW Hwu, K Schulten
Proceedings of 2nd Workshop on General Purpose Processing on Graphics …, 2009
612009
Stable small quantum dots for synaptic receptor tracking on live neurons
E Cai, P Ge, SH Lee, O Jeyifous, Y Wang, Y Liu, KM Wilson, SJ Lim, ...
Angewandte Chemie 126 (46), 12692-12696, 2014
592014
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
eLife 5, e16105, 2016
502016
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