John E. Stone

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	All	Since 2016
Citations	8753	3955
h-index	33	27
i10-index	49	43

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Klaus SchultenProfessor of Physics, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
James C PhillipsSenior Research Programmer, National Center for Supercomputing Applications, University of IllinoisVerified email at illinois.edu
Zaida (Zan) Luthey-SchultenUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Wen-mei W. HwuSenior Distinguished Research Scientist, NVIDIA; Professor and Sanders-AMD Chair of Electrical andVerified email at illinois.edu
Kirby VandivortUniversity of Illinois at Urbana-ChampaignVerified email at uiuc.edu
Elijah RobertsJohns Hopkins UniversityVerified email at jhu.edu
Axel KohlmeyerAssistant Dean for HPC, College of Science and Technology, Temple UniversityVerified email at temple.edu
Barry IsralewitzPost-Doctoral Research Associate, Theoretical and Computational Biophysics Group, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
David LuebkeVice President of Research, NVIDIA CorporationVerified email at nvidia.com
Simon GreenNVIDIA, Oculus, Facebook Reality LabsVerified email at oculus.com
John OwensDepartment of Electrical and Computer Engineering, UC DavisVerified email at ece.ucdavis.edu
Peter L. FreddolinoAssistant ProfessorVerified email at umich.edu
João Vieira RibeiroSilicon TherapeuticsVerified email at silicontx.com
Volodymyr KindratenkoUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Michael HallockUniversity of IllinoisVerified email at illinois.edu
Leonardo TrabucoPostdoctoral Research Fellow, University of HeidelbergVerified email at bioquant.uni-heidelberg.de
Rafael C BernardiAssistant Professor - Department of Physics at Auburn UniversityVerified email at auburn.edu
Emad Tajkhorshid, PhDProfessor of Biochemistry and Biophysics, University of IllinoisVerified email at illinois.edu
Ryan McGreevyBeckman Institute, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
Galen ArnoldNCSAVerified email at illinois.edu

John E. Stone

Senior Research Programmer, University of Illinois at Urbana-Champaign

Verified email at ks.uiuc.edu - Homepage

Visualization GPU computing parallel computing ray tracing haptics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
GPU computing JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips Proceedings of the IEEE 96 (5), 879-899, 2008	2417	2008
OpenCL: A parallel programming standard for heterogeneous computing systems JE Stone, D Gohara, G Shi Computing in science & engineering 12 (3), 66-73, 2010	1721	2010
Accelerating molecular modeling applications with graphics processors JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten Journal of Computational Chemistry 28 (16), 2618-2640, 2007	826	2007
GPU-accelerated molecular modeling coming of age JE Stone, DJ Hardy, IS Ufimtsev, K Schulten Journal of Molecular Graphics and Modelling 29 (2), 116-125, 2010	404	2010
An Efficient Library for Parallel Ray Tracing and Animation JE Stone University of Missouri-Rolla, 1998	340*	1998
GPU clusters for high-performance computing VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ... 2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009	283	2009
An asymmetric distributed shared memory model for heterogeneous parallel systems I Gelado, JE Stone, J Cabezas, S Patel, N Navarro, WW Hwu ACM SIGARCH Computer Architecture News 38 (1), 347-358, 2010	227	2010
Adapting a message-driven parallel application to GPU-accelerated clusters JC Phillips, JE Stone, K Schulten SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008	211	2008
A system for interactive molecular dynamics simulation JE Stone, J Gullingsrud, K Schulten Proceedings of the 2001 symposium on Interactive 3D graphics, 191-194, 2001	203	2001
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units--Radial Distribution Function Histogramming BG Levine, JE Stone, A Kohlmeyer Journal of Computational Physics 230 (9), 3556-3569, 2011	165	2011
Multilevel summation of electrostatic potentials using graphics processing units DJ Hardy, JE Stone, K Schulten Parallel Computing 35 (3), 164-177, 2009	139	2009
GPU acceleration of cutoff pair potentials for molecular modeling applications CI Rodrigues, DJ Hardy, JE Stone, K Schulten, WMW Hwu Proceedings of the 5th conference on Computing frontiers, 273-282, 2008	136	2008
Using VMD: an introductory tutorial J Hsin, A Arkhipov, Y Yin, JE Stone, K Schulten Current protocols in bioinformatics 24 (1), 5.7. 1-5.7. 48, 2008	125	2008
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories M Krone, J Stone, T Ertl, K Schulten EuroVis-Short Papers, 67-71, 2012	112	2012
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation E Roberts, JE Stone, Z Luthey‐Schulten Journal of Computational Chemistry 34 (3), 245-255, 2013	105	2013
Scientific Computing with Multicore and Accelerators W Alvaro, J Kurzak, J Dongarra, S Tomov, R Nath, S Williams, N Bell, ...	78*
In Scientific Computing with Multicore and Accelerators JE Stone, DJ Hardy, B Isralewitz, K Schulten Chapman & Hall/CRC Press, 2011	77*	2011
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten eLife 5, e16105, 2016	74	2016
QwikMD—Integrative Molecular Dynamics Toolkit for Novices and Experts JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ... Scientific reports 6, 26536, 2016	72	2016
Stable small quantum dots for synaptic receptor tracking on live neurons E Cai, P Ge, SH Lee, O Jeyifous, Y Wang, Y Liu, KM Wilson, SJ Lim, ... Angewandte Chemie 126 (46), 12692-12696, 2014	70	2014

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