Chris Whidden
Chris Whidden
Assistant Professor, Faculty of Computer Science, Dalhousie University
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Interactions in the microbiome: communities of organisms and communities of genes
E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
FEMS microbiology reviews 38 (1), 90-118, 2014
1672014
Fixed-parameter algorithms for maximum agreement forests
C Whidden, RG Beiko, N Zeh
SIAM Journal on Computing 42 (4), 1431-1466, 2013
732013
Supertrees based on the subtree prune-and-regraft distance
C Whidden, N Zeh, RG Beiko
Systematic Biology 63 (4), 566-581, 2014
722014
A unifying view on approximation and FPT of agreement forests
C Whidden, N Zeh
International Workshop on Algorithms in Bioinformatics, 390-402, 2009
542009
Quantifying MCMC Exploration of Phylogenetic Tree Space
C Whidden, FA Matsen IV
Systematic Biology 64 (3), 472-491, 2015
532015
Fast FPT algorithms for computing rooted agreement forests: Theory and experiments
C Whidden, RG Beiko, N Zeh
International Symposium on Experimental Algorithms, 141-153, 2010
512010
Ricci–Ollivier curvature of the rooted phylogenetic subtree–prune–regraft graph
C Whidden, FA Matsen IV
Theoretical Computer Science 699, 1-20, 2017
232017
Fixed-parameter and approximation algorithms for maximum agreement forests
C Whidden, RG Beiko, N Zeh
arXiv preprint arXiv:1108.2664, 2011
232011
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees
C Whidden, RG Beiko, N Zeh
Algorithmica, 2015
202015
Calculating the unrooted subtree prune-and-regraft distance
C Whidden, FA Matsen
IEEE/ACM transactions on computational biology and bioinformatics 16 (3 …, 2018
162018
Hybridization number on three rooted binary trees is EPT
L Van Iersel, S Kelk, N Lekic, C Whidden, N Zeh
SIAM Journal on Discrete Mathematics 30 (3), 1607-1631, 2016
112016
19 Dubious ways to compute the marginal likelihood of a phylogenetic tree topology
M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin
Systematic biology 69 (2), 209-220, 2020
82020
Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees
C Whidden, FA Matsen IV
2018 Proceedings of the Fifteenth Workshop on Analytic Algorithmics and …, 2018
72018
The combinatorics of discrete time-trees: theory and open problems
A Gavryushkin, C Whidden, FA Matsen
Journal of mathematical biology 76 (5), 1101-1121, 2018
62018
DalTREC 2005 QA System Jellyfish: Mark-and-Match Approach to Question Answering.
T Abou-Assaleh, N Cercone, J Doyle, V Keselj, C Whidden
TREC, 2005
52005
Finding optimal parameters for edit distance based sequence classification is NP-hard
V Kešelj, H Liu, N Zeh, C Blouin, C Whidden
Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in …, 2009
32009
Simple and Effective Question Processing using Regular Expressions and WordNet
C Whidden
Dalhousie FCS Technical Report, 2005
32005
A resolution of the static formulation question for the problem of computing the history bound
J Matsieva, S Kelk, C Scornavacca, C Whidden, D Gusfield
IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2016
22016
Hybridization number on three trees
L van Iersel, S Kelk, N Lekic, C Whidden, N Zeh
arXiv preprint arXiv:1402.2136, 2014
22014
Efficient computation of maximum agreement forests and their applications
C Whidden
Ph. D. dissertation, Dalhousie University, 2013
22013
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Artículos 1–20