miR2Disease: a manually curated database for microRNA deregulation in human disease Q Jiang, Y Wang, Y Hao, L Juan, M Teng, X Zhang, M Li, G Wang, Y Liu Nucleic acids research 37 (suppl_1), D98-D104, 2009 | 1571 | 2009 |
Prioritization of disease microRNAs through a human phenome-microRNAome network Q Jiang, Y Hao, G Wang, L Juan, T Zhang, M Teng, Y Liu, Y Wang BMC systems biology 4, 1-9, 2010 | 381 | 2010 |
Analytical and clinical validation of expressed variants and fusions from the whole transcriptome of thyroid FNA samples TE Angell, LJ Wirth, ME Cabanillas, ML Shindo, ES Cibas, JE Babiarz, ... Frontiers in endocrinology 10, 612, 2019 | 49 | 2019 |
Afirma Genomic Sequencing Classifier and Xpression Atlas molecular findings in consecutive Bethesda III-VI thyroid nodules MI Hu, SG Waguespack, C Dosiou, PW Ladenson, MJ Livhits, LJ Wirth, ... The Journal of Clinical Endocrinology & Metabolism 106 (8), 2198-2207, 2021 | 46 | 2021 |
Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation X Zhang, H Lin, H Zhao, Y Hao, M Mort, DN Cooper, Y Zhou, Y Liu Human molecular genetics 23 (11), 3024-3034, 2014 | 36 | 2014 |
Improving alignment accuracy on homopolymer regions for semiconductor-based sequencing technologies W Feng, S Zhao, D Xue, F Song, Z Li, D Chen, B He, Y Hao, Y Wang, ... BMC genomics 17, 87-93, 2016 | 33 | 2016 |
Tissue-specific co-expression of long non-coding and coding RNAs associated with breast cancer W Wu, EK Wagner, Y Hao, X Rao, H Dai, J Han, J Chen, AMV Storniolo, ... Scientific reports 6 (1), 32731, 2016 | 29 | 2016 |
Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data A Zhou, MR Breese, Y Hao, HJ Edenberg, L Li, TC Skaar, Y Liu BMC genomics 13, 1-10, 2012 | 29 | 2012 |
Identification of Hürthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms Y Hao, QY Duh, RT Kloos, J Babiarz, RM Harrell, ST Traweek, SY Kim, ... BMC Systems Biology 13 (Suppl 2), 27, 2019 | 28 | 2019 |
Dependence receptor UNC5A restricts luminal to basal breast cancer plasticity and metastasis SPHN Maria B. Padua, Poornima Bhat-Nakshatri, Manjushree Anjanappa, Mayuri S ... Breast Cancer Research 35, 2018 | 26* | 2018 |
A system for detecting high impact-low frequency mutations in primary tumors and metastases M Anjanappa*, Y Hao*, ER Simpson Jr., P Bhat-Nakshatri, JB Nelson, ... Oncogene, 2017 | 25 | 2017 |
Weighted network-based inference of human microrna-disease associations Q Jiang, Y Hao, G Wang, T Zhang, Y Wang 2010 Fifth International Conference on Frontier of Computer Science and …, 2010 | 22 | 2010 |
Analytical verification performance of afirma genomic sequencing classifier in the diagnosis of cytologically indeterminate thyroid nodules Y Hao, Y Choi, JE Babiarz, RT Kloos, GC Kennedy, J Huang, PS Walsh Frontiers in endocrinology 10, 438, 2019 | 20 | 2019 |
Real-world performance of the Afirma Genomic Sequencing Classifier (GSC)—a meta-analysis CE Nasr, M Andrioli, M Endo, RM Harrell, MJ Livhits, I Osakwe, ... The Journal of Clinical Endocrinology & Metabolism 108 (6), 1526-1532, 2023 | 17 | 2023 |
Improving Lung Cancer Risk Stratification Leveraging Whole Transcriptome RNA Sequencing and Machine Learning across Multiple Cohorts Y Choi*, J Qu*, S Wu, Y Hao, J Zhang, J Ning, XI Yang, L Lofaro, ... APBC 2020 (The 18th Asia Pacific Bioinformatics Conference), 2020 | 16 | 2020 |
Preoperative identification of medullary thyroid carcinoma (MTC): clinical validation of the Afirma MTC RNA-sequencing classifier GW Randolph, JA Sosa, Y Hao, TE Angell, DC Shonka, VA LiVolsi, ... Thyroid 32 (9), 1069-1076, 2022 | 11 | 2022 |
PASSPORT-seq: a novel high-throughput bioassay to functionally test polymorphisms in micro-RNA target sites J Ipe, KS Collins, Y Hao, H Gao, P Bhatia, A Gaedigk, Y Liu, TC Skaar Frontiers in genetics 9, 219, 2018 | 11 | 2018 |
RareVar: a Framework for Detecting Low Frequency Single Nucleotide Variants Y Hao, XX Xuei, L Li, N Harikrishna, H Edenberg, Y Liu Journal of Computational Biology 24, 2017 | 9 | 2017 |
Statistical modeling for sensitive detection of low-frequency single nucleotide variants Y Hao, P Zhang, X Xuei, H Nakshatri, HJ Edenberg, L Li, Y Liu BMC genomics 17, 217-226, 2016 | 5 | 2016 |
Breast heterogeneity: obstacles to developing universal biomarkers of breast cancer initiation and progression RC Dirks, HN Burney, M Anjanappa, GE Sandusky, Y Hao, Y Liu, ... Journal of the American College of Surgeons 231 (1), 85-96, 2020 | 3 | 2020 |