françois serra
françois serra
Computational Biology Group - BSC
Verified email at bsc.es
TitleCited byYear
ETE 3: reconstruction, analysis, and visualization of phylogenomic data
J Huerta-Cepas, F Serra, P Bork
Molecular biology and evolution 33 (6), 1635-1638, 2016
5192016
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
F Le Dily, D Baù, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ...
Genes & development 28 (19), 2151-2162, 2014
2022014
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ...
Nucleic Acids Research 39 (suppl 2), W470, 2011
1532011
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
F Serra, D Baù, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom
PLoS computational biology 13 (7), e1005665, 2017
117*2017
Role of tomato BRANCHED1‐like genes in the control of shoot branching
M Martín‐Trillo, EG Grandío, F Serra, F Marcel, ML Rodríguez‐Buey, ...
The Plant Journal, 2011
1062011
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
R Stadhouders, E Vidal, F Serra, B Di Stefano, F Le Dily, J Quilez, ...
Nature Genetics, 1, 2018
952018
Restraint-based three-dimensional modeling of genomes and genomic domains
F Serra, M Di Stefano, YG Spill, Y Cuartero, M Goodstadt, D Baù, ...
FEBS letters 589 (20), 2987-2995, 2015
662015
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains
M Trussart, F Serra, D Baù, I Junier, L Serrano, MA Marti-Renom
Nucleic acids research 43 (7), 3465-3477, 2015
402015
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ...
Nature medicine 24 (6), 868-880, 2018
332018
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
N Lavagnino, F Serra, L Arbiza, H Dopazo, E Hasson
Evolutionary bioinformatics online 8, 89, 2012
272012
Evolution of the biosynthesis of di‐myo‐inositol phosphate, a marker of adaptation to hot marine environments
LG Gonçalves, N Borges, F Serra, PL Fernandes, H Dopazo, H Santos
Environmental microbiology 14 (3), 691-701, 2012
262012
Recent human evolution has shaped geographical differences in susceptibility to disease
UM Marigorta, O Lao, F Casals, F Calafell, C Morcillo-Suárez, R Faria, ...
BMC genomics 12 (1), 55, 2011
232011
Sexual selection halts the relaxation of protamine 2 among rodents
L Lüke, A Vicens, F Serra, JJ Luque-Larena, H Dopazo, ERS Roldan, ...
PLoS one 6 (12), 2011
212011
Positive Selection in Nucleoporins Challenges Constraints on Early Expressed Genes in Drosophila Development
J Mensch, F Serra, NJ Lavagnino, H Dopazo, E Hasson
Genome biology and evolution 5 (11), 2231-2241, 2013
152013
Natural selection on functional modules, a genome-wide analysis
F Serra, L Arbiza, J Dopazo, H Dopazo
PLoS computational biology 7 (3), 2011
142011
3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data?
F Le Dily, F Serra, MA Marti‐Renom
Wiley Interdisciplinary Reviews: Computational Molecular Science 7 (5), e1308, 2017
132017
Neutral theory predicts the relative abundance and diversity of genetic elements in a broad array of eukaryotic genomes
F Serra, V Becher, H Dopazo
PLoS One 8 (6), 2013
132013
Selective constraints on protamine 2 in primates and rodents
L Lüke, M Tourmente, H Dopazo, F Serra, ERS Roldan
BMC evolutionary biology 16 (1), 21, 2016
82016
Parallel sequencing lives, or what makes large sequencing projects successful
J Quilez, E Vidal, FL Dily, F Serra, Y Cuartero, R Stadhouders, T Graf, ...
GigaScience 6 (11), gix100, 2017
5*2017
Analysis of five gene sets in chimpanzees suggests decoupling between the action of selection on protein-coding and on noncoding elements
G Santpere, E Carnero-Montoro, N Petit, F Serra, C Hvilsom, J Rambla, ...
Genome biology and evolution 7 (6), 1490-1505, 2015
22015
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Articles 1–20