| Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d’Ivoire C Essoh, L Latino, C Midoux, Y Blouin, G Loukou, SPA Nguetta, S Lathro, ... PloS one 10 (6), e0130548, 2015 | 76 | 2015 |
| Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa CP Libera Latino, Cédric Midoux, Yolande Hauck, Gilles Vergnaud Microbiology 162 (5), 748–763, 2016 | 60 | 2016 |
| Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions E Lejal, J Chiquet, J Aubert, S Robin, A Estrada-Peña, O Rue, C Midoux, ... Microbiome 9, 1-20, 2021 | 47 | 2021 |
| Comparative metatranscriptomic analysis of anaerobic digesters treating anionic surfactant contaminated wastewater TP Delforno, TZ Macedo, C Midoux, GV Lacerda Jr, O Rué, ... Science of the total environment 649, 482-494, 2019 | 42 | 2019 |
| Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiota analysis E Lejal, A Estrada-Peña, M Marsot, JF Cosson, O Rué, M Mariadassou, ... Frontiers in Microbiology 11, 492638, 2020 | 32 | 2020 |
| A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus C Pourcel, C Midoux, G Vergnaud, L Latino Journal of General Virology 98 (8), 2181-2189, 2017 | 30 | 2017 |
| Denitrifying bio-cathodes developed from constructed wetland sediments exhibit electroactive nitrate reducing biofilms dominated by the genera Azoarcus and Pontibacter T Philippon, J Tian, C Bureau, C Chaumont, C Midoux, J Tournebize, ... Bioelectrochemistry 140, 107819, 2021 | 29 | 2021 |
| Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption L Latino, C Midoux, G Vergnaud, C Pourcel PLoS One 14 (4), e0215456, 2019 | 26 | 2019 |
| Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol S Poirier, S Déjean, C Midoux, KA Lê Cao, O Chapleur Bioresource Technology 316, 123952, 2020 | 24 | 2020 |
| Study of a pilot scale microbial electrosynthesis reactor for organic waste biorefinery JH Tian, R Lacroix, AA Yaqoob, C Bureau, C Midoux, ... Energies 16 (2), 591, 2023 | 18* | 2023 |
| Methane production and microbial community acclimation of five manure inocula during psychrophilic anaerobic digestion of swine manure T Lendormi, K Jaziri, F Béline, S Le Roux, C Bureau, C Midoux, ... Journal of Cleaner Production 340, 130772, 2022 | 18 | 2022 |
| Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions FP Camargo, IK Sakamoto, TP Delforno, M Mariadassou, V Loux, ... Journal of Environmental Management 291, 112631, 2021 | 17 | 2021 |
| The Basis for Natural Multiresistance to Phage in Pseudomonas aeruginosa C Pourcel, C Midoux, G Vergnaud, L Latino Antibiotics 9 (6), 339, 2020 | 17 | 2020 |
| Metataxonomics, metagenomics and metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters F Puig-Castellví, C Midoux, A Guenne, D Conteau, O Franchi, C Bureau, ... Bioresource Technology 346, 126612, 2022 | 15 | 2022 |
| Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics VQH Ngo, F Enault, C Midoux, M Mariadassou, O Chapleur, L Mazéas, ... Environmental Microbiology 24 (10), 4853-4868, 2022 | 13 | 2022 |
| Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage C Pourcel, C Midoux, Y Hauck, G Vergnaud, L Latino PLoS One 12 (1), e0169684, 2017 | 12 | 2017 |
| Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes N Mach, C Midoux, S Leclercq, S Pennarun, L Le Moyec, O Rué, C Robert, ... Communications Biology 5 (1), 1032, 2022 | 11* | 2022 |
| Microbial and functional characterization of granulated sludge from full-scale UASB thermophilic reactor applied to sugarcane vinasse treatment FP Camargo, IK Sakamoto, TP Delforno, C Midoux, ICS Duarte, EL Silva, ... Environmental Technology 44 (21), 3141-3160, 2023 | 10 | 2023 |
| Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics K Reichel, V Bahier, C Midoux, N Parisey, JP Masson, S Stoeckel Algorithms for Molecular Biology 10, 1-14, 2015 | 10 | 2015 |
| Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history A Bize, C Midoux, M Mariadassou, S Schbath, P Forterre, V Da Cunha BMC genomics 22, 1-22, 2021 | 9 | 2021 |
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