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Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ... Nature neuroscience 19 (11), 1454-1462, 2016 | 448 | 2016 |
Targeted exploration and analysis of large cross-platform human transcriptomic compendia Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ... Nature methods 12 (3), 211-214, 2015 | 149 | 2015 |
Atg5 regulates late endosome and lysosome biogenesis JY Peng, R Zhang, YT Cui, HD Liu, XX Zhao, L Huang, MX Hu, XX Yuan, ... Science China Life Sciences 57, 59-68, 2014 | 32 | 2014 |
Presenilin 1 phosphorylation regulates amyloid-β degradation by microglia JH Ledo, T Liebmann, R Zhang, JC Chang, EP Azevedo, E Wong, ... Molecular psychiatry 26 (10), 5620-5635, 2021 | 31 | 2021 |
Tissue-specific enhancer functional networks for associating distal regulatory regions to disease X Chen, J Zhou, R Zhang, AK Wong, CY Park, CL Theesfeld, ... Cell systems 12 (4), 353-362. e6, 2021 | 25 | 2021 |
Semi-supervised single-cell cross-modality translation using Polarbear R Zhang, L Meng-Papaxanthos, JP Vert, WS Noble International Conference on Research in Computational Molecular Biology, 20-35, 2022 | 16 | 2022 |
Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development JH Ledo, R Zhang, L Mesin, D Mourão-Sá, EP Azevedo, OG Troyanskaya, ... PloS one 15 (8), e0237773, 2020 | 10 | 2020 |
Multimodal single-cell translation and alignment with semi-supervised learning R Zhang, L Meng-Papaxanthos, J Vert, WS Noble Journal of Computational Biology 29 (11), 1198-1212, 2022 | 4 | 2022 |
A High-Throughput PIXUL–Matrix-Based Toolbox to Profile Frozen and Formalin-Fixed Paraffin-Embedded Tissues Multiomes D Mar, IM Babenko, R Zhang, WS Noble, O Denisenko, T Vaisar, ... Laboratory Investigation 104 (1), 100282, 2024 | 2 | 2024 |
LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis L Meng-Papaxanthos, R Zhang, G Li, M Cuturi, WS Noble, JP Vert Bioinformatics 39 (7), btad420, 2023 | 1 | 2023 |
An integrated view of the structure and function of the human 4D nucleome 4D Nucleome Consortium, J Dekker, BA Oksuz, Y Zhang, Y Wang, ... bioRxiv, 2024.09. 17.613111, 2024 | | 2024 |
Cross-species imputation and comparison of single-cell transcriptomic profiles R Zhang, M Yang, J Schreiber, DR O’Day, JMA Turner, J Shendure, ... bioRxiv, 2023.10. 19.563173, 2024 | | 2024 |
Multi-condition and multi-modal temporal profile inference during mouse embryonic development R Zhang, C Qiu, G Filippova, G Li, J Shendure, JP Vert, X Deng, ... bioRxiv, 2024 | | 2024 |
Into the single cell multiverse: an end-to-end dataset for procedural knowledge extraction in biomedical texts R Dannenfelser, J Zhong, R Zhang, V Yao Advances in Neural Information Processing Systems 36, 2024 | | 2024 |
Pseudotime analysis for time-series single-cell sequencing and imaging data G Li, HJ Kim, S Pendyala, R Zhang, CM Disteche, JP Vert, X Deng, ... bioRxiv, 2023.11. 03.565575, 2023 | | 2023 |
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Identifying genes and pathways linking astrocyte regional specificity to Alzheimer’s disease susceptibility R Zhang, M Knudsen, PDC Vasques, A Tadych, P Rodriguez-Rodriguez, ... bioRxiv, 2022.11. 16.515390, 2022 | | 2022 |
Correction: Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development JH Ledo, R Zhang, L Mesin, D Mourão-Sá, EP Azevedo, HM Silva, ... Plos one 16 (2), e0247680, 2021 | | 2021 |