Follow
Ran Zhang
Ran Zhang
Verified email at uw.edu
Title
Cited by
Cited by
Year
Understanding multicellular function and disease with human tissue-specific networks
CS Greene, A Krishnan, AK Wong, E Ricciotti, RA Zelaya, ...
Nature genetics 47 (6), 569-576, 2015
9082015
Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder
A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ...
Nature neuroscience 19 (11), 1454-1462, 2016
4482016
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ...
Nature methods 12 (3), 211-214, 2015
1492015
Atg5 regulates late endosome and lysosome biogenesis
JY Peng, R Zhang, YT Cui, HD Liu, XX Zhao, L Huang, MX Hu, XX Yuan, ...
Science China Life Sciences 57, 59-68, 2014
322014
Presenilin 1 phosphorylation regulates amyloid-β degradation by microglia
JH Ledo, T Liebmann, R Zhang, JC Chang, EP Azevedo, E Wong, ...
Molecular psychiatry 26 (10), 5620-5635, 2021
312021
Tissue-specific enhancer functional networks for associating distal regulatory regions to disease
X Chen, J Zhou, R Zhang, AK Wong, CY Park, CL Theesfeld, ...
Cell systems 12 (4), 353-362. e6, 2021
252021
Semi-supervised single-cell cross-modality translation using Polarbear
R Zhang, L Meng-Papaxanthos, JP Vert, WS Noble
International Conference on Research in Computational Molecular Biology, 20-35, 2022
162022
Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development
JH Ledo, R Zhang, L Mesin, D Mourão-Sá, EP Azevedo, OG Troyanskaya, ...
PloS one 15 (8), e0237773, 2020
102020
Multimodal single-cell translation and alignment with semi-supervised learning
R Zhang, L Meng-Papaxanthos, J Vert, WS Noble
Journal of Computational Biology 29 (11), 1198-1212, 2022
42022
A High-Throughput PIXUL–Matrix-Based Toolbox to Profile Frozen and Formalin-Fixed Paraffin-Embedded Tissues Multiomes
D Mar, IM Babenko, R Zhang, WS Noble, O Denisenko, T Vaisar, ...
Laboratory Investigation 104 (1), 100282, 2024
22024
LSMMD-MA: scaling multimodal data integration for single-cell genomics data analysis
L Meng-Papaxanthos, R Zhang, G Li, M Cuturi, WS Noble, JP Vert
Bioinformatics 39 (7), btad420, 2023
12023
An integrated view of the structure and function of the human 4D nucleome
4D Nucleome Consortium, J Dekker, BA Oksuz, Y Zhang, Y Wang, ...
bioRxiv, 2024.09. 17.613111, 2024
2024
Cross-species imputation and comparison of single-cell transcriptomic profiles
R Zhang, M Yang, J Schreiber, DR O’Day, JMA Turner, J Shendure, ...
bioRxiv, 2023.10. 19.563173, 2024
2024
Multi-condition and multi-modal temporal profile inference during mouse embryonic development
R Zhang, C Qiu, G Filippova, G Li, J Shendure, JP Vert, X Deng, ...
bioRxiv, 2024
2024
Into the single cell multiverse: an end-to-end dataset for procedural knowledge extraction in biomedical texts
R Dannenfelser, J Zhong, R Zhang, V Yao
Advances in Neural Information Processing Systems 36, 2024
2024
Pseudotime analysis for time-series single-cell sequencing and imaging data
G Li, HJ Kim, S Pendyala, R Zhang, CM Disteche, JP Vert, X Deng, ...
bioRxiv, 2023.11. 03.565575, 2023
2023
MultiomicsTracks96: A high throughput PIXUL-Matrix-based toolbox to profile frozen and FFPE tissues multiomes
D Mar, IM Babenko, R Zhang, WS Noble, O Denisenko, T Vaisar, ...
bioRxiv, 2023.03. 16.533031, 2023
2023
Identifying genes and pathways linking astrocyte regional specificity to Alzheimer’s disease susceptibility
R Zhang, M Knudsen, PDC Vasques, A Tadych, P Rodriguez-Rodriguez, ...
bioRxiv, 2022.11. 16.515390, 2022
2022
Correction: Lack of a site-specific phosphorylation of Presenilin 1 disrupts microglial gene networks and progenitors during development
JH Ledo, R Zhang, L Mesin, D Mourão-Sá, EP Azevedo, HM Silva, ...
Plos one 16 (2), e0247680, 2021
2021
The system can't perform the operation now. Try again later.
Articles 1–19