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T. Andrew Binkowski
T. Andrew Binkowski
Argonne National Laboratory, The University of Chicago
Verified email at uchicago.edu
Title
Cited by
Cited by
Year
CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
J Dundas, Z Ouyang, J Tseng, A Binkowski, Y Turpaz, J Liang
Nucleic acids research 34 (suppl_2), W116-W118, 2006
19792006
CASTp: computed atlas of surface topography of proteins
TA Binkowski, S Naghibzadeh, J Liang
Nucleic acids research 31 (13), 3352-3355, 2003
8912003
A dual function of the CRISPR–Cas system in bacterial antivirus immunity and DNA repair
M Babu, N Beloglazova, R Flick, C Graham, T Skarina, B Nocek, ...
Molecular microbiology 79 (2), 484-502, 2011
3512011
Inferring functional relationships of proteins from local sequence and spatial surface patterns
TA Binkowski, L Adamian, J Liang
Journal of molecular biology 332 (2), 505-526, 2003
1992003
K-8 learning trajectories derived from research literature: Sequence, repetition, conditionals
KM Rich, C Strickland, TA Binkowski, C Moran, D Franklin
Proceedings of the 2017 ACM conference on international computing education …, 2017
1432017
Structure of apo-and monometalated forms of NDM-1—a highly potent carbapenem-hydrolyzing metallo-β-lactamase
Y Kim, C Tesar, J Mire, R Jedrzejczak, A Binkowski, G Babnigg, ...
PloS one 6 (9), e24621, 2011
1432011
topoSNP: a topographic database of non‐synonymous single nucleotide polymorphisms with and without known disease association
NO Stitziel, TA Binkowski, YY Tseng, S Kasif, J Liang
Nucleic acids research 32 (suppl_1), D520-D522, 2004
1262004
Large-scale evaluation of protein reductive methylation for improving protein crystallization
Y Kim, P Quartey, H Li, L Volkart, C Hatzos, C Chang, B Nocek, M Cuff, ...
Nature methods 5 (10), 853-854, 2008
1142008
pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins
TA Binkowski, P Freeman, J Liang
Nucleic Acids Research 32 (suppl_2), W555-W558, 2004
932004
Structure of surface layer homology (SLH) domains from Bacillus anthracis surface array protein
J Kern, R Wilton, R Zhang, TA Binkowski, A Joachimiak, O Schneewind
Journal of Biological Chemistry 286 (29), 26042-26049, 2011
872011
Protein surface analysis for function annotation in high‐throughput structural genomics pipeline
TA Binkowski, A Joachimiak, J Liang
Protein Science 14 (12), 2972-2981, 2005
862005
Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites
TA Binkowski, A Joachimiak
BMC structural biology 8, 1-23, 2008
792008
A K-8 debugging learning trajectory derived from research literature
KM Rich, C Strickland, TA Binkowski, D Franklin
Proceedings of the 50th ACM technical symposium on computer science …, 2019
692019
Higher-order interhelical spatial interactions in membrane proteins
L Adamian, R Jackups Jr, TA Binkowski, J Liang
Journal of Molecular Biology 327 (1), 251-272, 2003
672003
Decomposition: A K-8 computational thinking learning trajectory
KM Rich, TA Binkowski, C Strickland, D Franklin
Proceedings of the 2018 ACM conference on international computing education …, 2018
592018
Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria
Y Kim, G Joachimiak, Z Ye, TA Binkowski, R Zhang, P Gornicki, ...
Proceedings of the National Academy of Sciences 108 (25), 10109-10114, 2011
572011
Biochemical and structural characterization of a novel family of cystathionine β-synthase domain proteins fused to a Zn ribbon-like domain
M Proudfoot, SA Sanders, A Singer, R Zhang, G Brown, A Binkowski, L Xu, ...
Journal of molecular biology 375 (1), 301-315, 2008
532008
Bacillus anthracis Inosine 5′-Monophosphate Dehydrogenase in Action: The First Bacterial Series of Structures of Phosphate Ion-, Substrate-, and Product-Bound …
M Makowska-Grzyska, Y Kim, R Wu, R Wilton, DR Gollapalli, XK Wang, ...
Biochemistry 51 (31), 6148-6163, 2012
412012
The 1.38 Å crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway
Y Qiu, R Zhang, TA Binkowski, V Tereshko, A Joachimiak, A Kossiakoff
Proteins: Structure, Function, and Bioinformatics 71 (2), 525-533, 2008
382008
Predicting HLA class I non-permissive amino acid residues substitutions
TA Binkowski, SR Marino, A Joachimiak
Public Library of Science 7 (8), e41710, 2012
362012
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