Nigam Shah

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Mark MusenProfessor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Paea LePenduUniversity of California, RiversideVerified email at ucr.edu
Clement JonquetSenior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)Verified email at lirmm.fr
Natasha NoyGoogle Inc.Verified email at acm.org
Srini IyerFAIRVerified email at fb.com
Alison CallahanStanford UniversityVerified email at stanford.edu
Trish WhetzelEMBL-EBIVerified email at ebi.ac.uk
Nicholas LeeperProfessor, Stanford UniversityVerified email at stanford.edu
Patrick RyanJanssen Research and DevelopmentVerified email at cornell.edu
Juan M. BandaGeorgia State UniversityVerified email at gsu.edu
George HripcsakColumbia UniversityVerified email at columbia.edu
Susanna-Assunta SansoneUniversity of Oxford, Professor of Data Readiness; Oxford e-Research Centre, Associate Director.Verified email at oerc.ox.ac.uk
Kevin T. NeadMD Anderson Cancer CenterVerified email at mdanderson.org
Alejandro SchulerAssistant Professor, UC BerkeleyVerified email at berkeley.edu
Philippe Rocca-SerraUniversity of OxfordVerified email at oerc.ox.ac.uk
Adrien CouletInria Paris & Loria, NancyVerified email at inria.fr
John P CookeChair, Department of Cardiovascular Sciences, Houston Methodist Research InstituteVerified email at houstonmethodist.org
Greg GaskinMedical Student, Stanford UniversityVerified email at stanford.edu
Barry SmithProfessor of Philosophy, Biomedical Informatics, and Computer Science, University at BuffaloVerified email at buffalo.edu
Martijn SchuemieJanssen R&DVerified email at ohdsi.org

Nigam Shah

Professor of Medicine, and Biomedical Data Science, Stanford University

Verified email at stanford.edu - Homepage

ontology data mining medical informatics Biomedical Informatics


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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ... Nature biotechnology 25 (11), 1251-1255, 2007	2721	2007
Scalable and accurate deep learning with electronic health records A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ... NPJ digital medicine 1 (1), 1-10, 2018	1308	2018
BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl 2), W170-W173, 2009	1002	2009
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications PL Whetzel, NF Noy, NH Shah, PR Alexander, C Nyulas, T Tudorache, ... Nucleic Acids Research 39 (suppl 2), W541, 2011	756	2011
Observational Health Data Sciences and Informatics (OHDSI): opportunities for observational researchers G Hripcsak, JD Duke, NH Shah, CG Reich, V Huser, MJ Schuemie, ... Studies in health technology and informatics 216, 574, 2015	753	2015
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	705	2010
Implementing machine learning in health care—addressing ethical challenges DS Char, NH Shah, D Magnus The New England journal of medicine 378 (11), 981, 2018	632	2018
Rates of co-infection between SARS-CoV-2 and other respiratory pathogens D Kim, J Quinn, B Pinsky, NH Shah, I Brown Jama 323 (20), 2085-2086, 2020	616	2020
Comparison of concept recognizers for building the Open Biomedical Annotator APCMAM Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin BMC Bioinformatics 10 (S9), S14, 2009	533*	2009
Proton pump inhibitor usage and the risk of myocardial infarction in the general population NH Shah, P LePendu, A Bauer-Mehren, YT Ghebremariam, SV Iyer, ... PloS one 10 (6), e0124653, 2015	364	2015
Novel data‐mining methodologies for adverse drug event discovery and analysis R Harpaz, W DuMouchel, NH Shah, D Madigan, P Ryan, C Friedman Clinical Pharmacology & Therapeutics 91 (6), 1010-1021, 2012	361	2012
Biomedical ontologies: a functional perspective DL Rubin, NH Shah, NF Noy Briefings in bioinformatics 9 (1), 75-90, 2008	357	2008
Improving palliative care with deep learning A Avati, K Jung, S Harman, L Downing, A Ng, NH Shah BMC medical informatics and decision making 18 (4), 55-64, 2018	334	2018
Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome K Röltgen, AE Powell, OF Wirz, BA Stevens, CA Hogan, J Najeeb, ... Science immunology 5 (54), eabe0240, 2020	308	2020
What this computer needs is a physician: humanism and artificial intelligence A Verghese, NH Shah, RA Harrington Jama 319 (1), 19-20, 2018	269	2018
Characterizing treatment pathways at scale using the OHDSI network G Hripcsak, PB Ryan, JD Duke, NH Shah, RW Park, V Huser, MA Suchard, ... Proceedings of the National Academy of Sciences 113 (27), 7329-7336, 2016	266	2016
Characterizing the stress/defense transcriptome of Arabidopsis R Mahalingam, A Gomez-Buitrago, N Eckardt, N Shah, A Guevara-Garcia, ... Genome Biol 4 (3), R20, 2003	256	2003
The National Center for Biomedical Ontology MA Musen, NF Noy, NH Shah, CG Chute, MA Storey	248*	2005
Web-scale pharmacovigilance: listening to signals from the crowd RW White, NP Tatonetti, NH Shah, RB Altman, E Horvitz Journal of the American Medical Informatics Association 20 (3), 404-408, 2013	244	2013
Performance of pharmacovigilance signal‐detection algorithms for the FDA adverse event reporting system R Harpaz, W DuMouchel, P LePendu, A Bauer‐Mehren, P Ryan, ... Clinical Pharmacology & Therapeutics 93 (6), 539-546, 2013	243	2013

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