Nigam Shah

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Mark MusenProfessor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Paea LePenduUniversity of California, RiversideVerified email at ucr.edu
Clement JonquetAssociate Research Scientist – INRAE (MISTEA) & Associate Professor – Univ. of Montpellier (LIRMM)Verified email at lirmm.fr
Natasha NoyGoogle Inc.Verified email at acm.org
Srinivasan V IyerGraduate Student of Computer Science, University of WashingtonVerified email at cs.stanford.edu
Trish WhetzelEMBL-EBIVerified email at ebi.ac.uk
Alison CallahanStanford UniversityVerified email at stanford.edu
Patrick RyanJanssen Research and DevelopmentVerified email at cornell.edu
Juan M. BandaGeorgia State UniversityVerified email at gsu.edu
Susanna-Assunta SansoneUniversity of Oxford, Oxford e-Research Centre (Associate Director, Associate Professor)Verified email at oerc.ox.ac.uk
George HripcsakColumbia UniversityVerified email at columbia.edu
Kevin T. NeadMD Anderson Cancer CenterVerified email at mdanderson.org
Philippe Rocca-SerraUniversity of OxfordVerified email at oerc.ox.ac.uk
Adrien CouletInria Paris & Loria, NancyVerified email at inria.fr
Barry SmithProfessor of Philosophy, Biomedical Informatics, and Computer Science, University at BuffaloVerified email at buffalo.edu
Greg GaskinMedical Student, Stanford UniversityVerified email at stanford.edu
John P CookeChair, Department of Cardiovascular Sciences, Houston Methodist Research InstituteVerified email at houstonmethodist.org
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
Martijn SchuemieJanssen R&DVerified email at ohdsi.org

Nigam Shah

Associate Professor of Medicine, Stanford University

Verified email at stanford.edu - Homepage

ontology data mining medical informatics Biomedical Informatics


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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ... Nature biotechnology 25 (11), 1251-1255, 2007	2460	2007
BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl 2), W170-W173, 2009	946	2009
Scalable and accurate deep learning with electronic health records A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ... NPJ Digital Medicine 1 (1), 1-10, 2018	844	2018
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications PL Whetzel, NF Noy, NH Shah, PR Alexander, C Nyulas, T Tudorache, ... Nucleic Acids Research 39 (suppl 2), W541, 2011	680	2011
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	637	2010
Observational Health Data Sciences and Informatics (OHDSI): opportunities for observational researchers G Hripcsak, JD Duke, NH Shah, CG Reich, V Huser, MJ Schuemie, ... Studies in health technology and informatics 216, 574, 2015	506	2015
Comparison of concept recognizers for building the Open Biomedical Annotator APCMAM Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin BMC Bioinformatics 10 (S9), S14, 2009	487*	2009
Implementing machine learning in health care—addressing ethical challenges DS Char, NH Shah, D Magnus The New England journal of medicine 378 (11), 981, 2018	383	2018
Rates of co-infection between SARS-CoV-2 and other respiratory pathogens D Kim, J Quinn, B Pinsky, NH Shah, I Brown Jama 323 (20), 2085-2086, 2020	366	2020
Proton pump inhibitor usage and the risk of myocardial infarction in the general population NH Shah, P LePendu, A Bauer-Mehren, YT Ghebremariam, SV Iyer, ... PloS one 10 (6), e0124653, 2015	345	2015
Biomedical ontologies: a functional perspective DL Rubin, NH Shah, NF Noy Briefings in bioinformatics 9 (1), 75-90, 2008	339	2008
Novel data‐mining methodologies for adverse drug event discovery and analysis R Harpaz, W DuMouchel, NH Shah, D Madigan, P Ryan, C Friedman Clinical Pharmacology & Therapeutics 91 (6), 1010-1021, 2012	325	2012
Characterizing the stress/defense transcriptome of Arabidopsis R Mahalingam, A Gomez-Buitrago, N Eckardt, N Shah, A Guevara-Garcia, ... Genome Biol 4 (3), R20, 2003	256	2003
Improving palliative care with deep learning A Avati, K Jung, S Harman, L Downing, A Ng, NH Shah BMC medical informatics and decision making 18 (4), 55-64, 2018	239	2018
Web-scale pharmacovigilance: listening to signals from the crowd RW White, NP Tatonetti, NH Shah, RB Altman, E Horvitz Journal of the American Medical Informatics Association 20 (3), 404-408, 2013	232	2013
The National Center for Biomedical Ontology MA Musen, NF Noy, NH Shah, CG Chute, MA Storey	227*	2005
Performance of pharmacovigilance signal‐detection algorithms for the FDA adverse event reporting system R Harpaz, W DuMouchel, P LePendu, A Bauer‐Mehren, P Ryan, ... Clinical Pharmacology & Therapeutics 93 (6), 539-546, 2013	212	2013
What this computer needs is a physician: humanism and artificial intelligence A Verghese, NH Shah, RA Harrington Jama 319 (1), 19-20, 2018	206	2018
Unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine YT Ghebremariam, P LePendu, JC Lee, DA Erlanson, A Slaviero, ... Circulation 128 (8), 845-853, 2013	203	2013
Characterizing treatment pathways at scale using the OHDSI network G Hripcsak, PB Ryan, JD Duke, NH Shah, RW Park, V Huser, MA Suchard, ... Proceedings of the National Academy of Sciences 113 (27), 7329-7336, 2016	194	2016

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