| The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration B Smith, M Ashburner, C Rosse, J Bard, W Bug, W Ceusters, LJ Goldberg, ... Nature biotechnology 25 (11), 1251-1255, 2007 | 2295 | 2007 |
| BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl 2), W170-W173, 2009 | 896 | 2009 |
| BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications PL Whetzel, NF Noy, NH Shah, PR Alexander, C Nyulas, T Tudorache, ... Nucleic Acids Research 39 (suppl 2), W541, 2011 | 609 | 2011 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 597 | 2010 |
| Scalable and accurate deep learning with electronic health records A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ... NPJ Digital Medicine 1 (1), 18, 2018 | 525 | 2018 |
| Comparison of concept recognizers for building the Open Biomedical Annotator APCMAM Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin BMC Bioinformatics 10 (S9), S14, 2009 | 454* | 2009 |
| Observational Health Data Sciences and Informatics (OHDSI): opportunities for observational researchers G Hripcsak, JD Duke, NH Shah, CG Reich, V Huser, MJ Schuemie, ... Studies in health technology and informatics 216, 574, 2015 | 344 | 2015 |
| Biomedical ontologies: a functional perspective DL Rubin, NH Shah, NF Noy Briefings in bioinformatics 9 (1), 75-90, 2008 | 321 | 2008 |
| Proton pump inhibitor usage and the risk of myocardial infarction in the general population NH Shah, P LePendu, A Bauer-Mehren, YT Ghebremariam, SV Iyer, ... PloS one 10 (6), e0124653, 2015 | 311 | 2015 |
| Novel data‐mining methodologies for adverse drug event discovery and analysis R Harpaz, W DuMouchel, NH Shah, D Madigan, P Ryan, C Friedman Clinical Pharmacology & Therapeutics 91 (6), 1010-1021, 2012 | 301 | 2012 |
| Characterizing the stress/defense transcriptome of Arabidopsis R Mahalingam, A Gomez-Buitrago, N Eckardt, N Shah, A Guevara-Garcia, ... Genome Biol 4 (3), R20, 2003 | 248 | 2003 |
| Implementing machine learning in health care—addressing ethical challenges DS Char, NH Shah, D Magnus The New England journal of medicine 378 (11), 981, 2018 | 234 | 2018 |
| Web-scale pharmacovigilance: listening to signals from the crowd RW White, NP Tatonetti, NH Shah, RB Altman, E Horvitz Journal of the American Medical Informatics Association 20 (3), 404-408, 2013 | 214 | 2013 |
| The National Center for Biomedical Ontology MA Musen, NF Noy, NH Shah, CG Chute, MA Storey | 212* | 2005 |
| Unexpected effect of proton pump inhibitors: elevation of the cardiovascular risk factor asymmetric dimethylarginine YT Ghebremariam, P LePendu, JC Lee, DA Erlanson, A Slaviero, ... Circulation 128 (8), 845-853, 2013 | 189 | 2013 |
| Performance of pharmacovigilance signal‐detection algorithms for the FDA adverse event reporting system R Harpaz, W DuMouchel, P LePendu, A Bauer‐Mehren, P Ryan, ... Clinical Pharmacology & Therapeutics 93 (6), 539-546, 2013 | 184 | 2013 |
| A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk DR Blair, CS Lyttle, JM Mortensen, CF Bearden, AB Jensen, ... Cell 155 (1), 70-80, 2013 | 180 | 2013 |
| Text mining for adverse drug events: the promise, challenges, and state of the art R Harpaz, A Callahan, S Tamang, Y Low, D Odgers, S Finlayson, K Jung, ... Drug safety 37 (10), 777-790, 2014 | 172 | 2014 |
| What this computer needs is a physician: humanism and artificial intelligence A Verghese, NH Shah, RA Harrington Jama 319 (1), 19-20, 2018 | 163 | 2018 |
| System and method for integrating and validating genotypic, phenotypic and medical information into a database according to a standardized ontology M Rabinowitz, J Sheena, Z Demko, C Clark, N Shah US Patent App. 11/634,550, 2007 | 162 | 2007 |
Mark MusenProfessor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
