Troy W. Whitfield
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
118162012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
12252011
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
J Wang, J Zhuang, S Iyer, XY Lin, TW Whitfield, MC Greven, BG Pierce, ...
Genome research 22 (9), 1798-1812, 2012
8772012
Simulating monovalent and divalent ions in aqueous solution using a Drude polarizable force field
H Yu, TW Whitfield, E Harder, G Lamoureux, I Vorobyov, VM Anisimov, ...
Journal of chemical theory and computation 6 (3), 774-786, 2010
3612010
Functional analysis of transcription factor binding sites in human promoters
TW Whitfield, J Wang, PJ Collins, EC Partridge, SF Aldred, ND Trinklein, ...
Genome biology 13 (9), R50, 2012
1632012
Understanding the dielectric properties of liquid amides from a polarizable force field
E Harder, VM Anisimov, TW Whitfield, AD MacKerell Jr, B Roux
The Journal of Physical Chemistry B 112 (11), 3509-3521, 2008
1322008
Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis
H Wu, TW Whitfield, JAR Gordon, JR Dobson, PWL Tai, AJ van Wijnen, ...
Genome biology 15 (3), 1-17, 2014
1012014
Theoretical Study of Aqueous Solvation of K+ Comparing ab Initio, Polarizable, and Fixed-Charge Models
TW Whitfield, S Varma, E Harder, G Lamoureux, SB Rempe, B Roux
Journal of chemical theory and computation 3 (6), 2068-2082, 2007
972007
Identification of functional modules that correlate with phenotypic difference: the influence of network topology
JH Hung, TW Whitfield, TH Yang, Z Hu, Z Weng, C DeLisi
Genome biology 11 (2), 1-16, 2010
802010
Structure and Hydrogen Bonding in Neat N-Methylacetamide:  Classical Molecular Dynamics and Raman Spectroscopy Studies of a Liquid of Peptidic Fragments
TW Whitfield, GJ Martyna, S Allison, SP Bates, H Vass, J Crain
The Journal of Physical Chemistry B 110 (8), 3624-3637, 2006
632006
Generalized parallel sampling
TW Whitfield, L Bu, JE Straub
Physica A: Statistical Mechanics and its Applications 305 (1-2), 157-171, 2002
562002
Quantum Drude oscillator model of atoms and molecules: Many-body polarization and dispersion interactions for atomistic simulation
AP Jones, J Crain, VP Sokhan, TW Whitfield, GJ Martyna
Physical Review B 87 (14), 144103, 2013
502013
Demethylated HSATII DNA and HSATII RNA foci sequester PRC1 and MeCP2 into cancer-specific nuclear bodies
LL Hall, M Byron, DM Carone, TW Whitfield, GP Pouliot, A Fischer, ...
Cell reports 18 (12), 2943-2956, 2017
472017
Genome-wide studies reveal that H3K4me3 modification in bivalent genes is dynamically regulated during the pluripotent cell cycle and stabilized upon differentiation
RA Grandy, TW Whitfield, H Wu, MP Fitzgerald, JJ VanOudenhove, ...
Molecular and cellular biology 36 (4), 615-627, 2016
442016
Chromatin dynamics regulate mesenchymal stem cell lineage specification and differentiation to osteogenesis
H Wu, JAR Gordon, TW Whitfield, PWL Tai, AJ van Wijnen, JL Stein, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (4), 438-449, 2017
392017
A combined experimental and theoretical study of ion solvation in liquid N-methylacetamide
H Yu, CL Mazzanti, TW Whitfield, RE Koeppe, OS Anderson, B Roux
Journal of the American Chemical Society 132 (31), 10847, 2010
382010
Liquid NMA: A surprisingly realistic model for hydrogen bonding motifs in proteins
TW Whitfield, GJ Martyna, S Allison, SP Bates, J Crain
Chemical physics letters 414 (1-3), 210-214, 2005
342005
Genome-wide co-occupancy of AML1-ETO and N-CoR defines the t (8; 21) AML signature in leukemic cells
DJ Trombly, TW Whitfield, S Padmanabhan, JAR Gordon, JB Lian, ...
BMC genomics 16 (1), 1-13, 2015
282015
Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region
PWL Tai, H Wu, JAR Gordon, TW Whitfield, AR Barutcu, AJ Van Wijnen, ...
Gene 550 (1), 1-9, 2014
272014
A unified formalism for many-body polarization and dispersion: The quantum Drude model applied to fluid xenon
TW Whitfield, GJ Martyna
Chemical physics letters 424 (4-6), 409-413, 2006
272006
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Articles 1–20