Chao Cheng
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
122252012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
14482012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
12492011
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775, 2010
9482010
Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9
M Wei, P Fabrizio, J Hu, H Ge, C Cheng, L Li, VD Longo
PLoS Genetics 4 (1), e13, 2008
4952008
A cis-regulatory map of the Drosophila genome
N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ...
Nature 471 (7339), 527-531, 2011
4922011
Sir2 blocks extreme life-span extension
P Fabrizio, C Gattazzo, L Battistella, M Wei, C Cheng, K McGrew, ...
Cell 123 (4), 655-667, 2005
4362005
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ...
Genome biology 13 (9), 1-22, 2012
2672012
Comparative analysis of the transcriptome across distant species
M Gerstein, J Rozowsky, K Yan, D Wang, C Cheng, B Brown, C Davis, ...
Nature 512, 445–448, 2014
2652014
Modeling gene expression using chromatin features in various cellular contexts
X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ...
Genome biology 13 (9), 1-17, 2012
2632012
CircNet: a database of circular RNAs derived from transcriptome sequencing data
YC Liu, JR Li, CH Sun, E Andrews, RF Chao, FM Lin, SL Weng, SD Hsu, ...
Nucleic Acids Res., pii: gkv940, 2015
2442015
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans.
W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Cheng, ...
Genome Res. 21 (2), 245-254, 2011
2142011
Comparative analysis of regulatory information and circuits across diverse species
A Boyle, C Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512, 453–456, 2014
1882014
A deep learning framework for modeling structural features of RNA-binding protein targets
S Zhang, J Zhou, H H, H Gong, L Chen, C Cheng, J Zeng
Nucleic Acids Res., gkv1025, 2015
1802015
Big data bioinformatics
C Greene, J Tan, M Ung, J Moore, C Cheng
J. Cell. Physiol., 2014
1802014
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ...
Genome Research 22 (9), 1658-1667, 2012
1702012
Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis.
Y Lee, X Yang, Y Huang, H Fan, Q Zhang, Y Wu, J Li, R Hasina, C Cheng, ...
PLoS computational biology 6 (4), 2010
1702010
Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization
Y Mishima, C Abreu-Goodger, AA Staton, C Stahlhut, C Shou, C Cheng, ...
Genes & development 23 (5), 619-632, 2009
1642009
Identification of cell cycle–regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors
GD Grant, L Brooks 3rd, X Zhang, JM Mahoney, V Martyanov, TA Wood, ...
Molecular biology of the cell 24 (23), 3634-3650, 2013
1532013
Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines
Q Cao, C Anyansi, X Hu, L Xu, L Xiong, W Tang, MTS Mok, C Cheng, ...
Nature genetics 49 (10), 1428-1436, 2017
1342017
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Articles 1–20