Justin P. Shaffer
Justin P. Shaffer
Dirección de correo verificada de health.ucsd.edu - Página principal
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An endohyphal bacterium (Chitinophaga, Bacteroidetes) alters carbon source use by Fusarium keratoplasticum (F. solani species complex, Nectriaceae)
JP Shaffer, JM U'Ren, RE Gallery, DA Baltrus, AE Arnold
Frontiers in microbiology 8, 350, 2017
442017
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
Genome biology 20 (1), 1-21, 2019
322019
Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves
JP Shaffer, C Sarmiento, PC Zalamea, RE Gallery, AS Davis, DA Baltrus, ...
Frontiers in Ecology and Evolution 4, 116, 2016
272016
Bacterial endosymbionts: master modulators of fungal phenotypes
SJ Araldi-Brondolo, J Spraker, JP Shaffer, EH Woytenko, DA Baltrus, ...
The Fungal Kingdom, 981-1004, 2017
252017
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
Msystems 5 (2), 2020
182020
Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds
JP Shaffer, PC Zalamea, C Sarmiento, RE Gallery, JW Dalling, AS Davis, ...
Fungal Ecology 36, 117-127, 2018
102018
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ...
Genome research 30 (6), 898-909, 2020
92020
Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants
YM Li, JP Shaffer, B Hall, H Ko
PloS one 14 (10), e0224417, 2019
82019
Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, P Chang, D Porter, T Phan, H Che, ...
bioRxiv, 852947, 2019
62019
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome. mSystems, 5 (2), e00901-19
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
52020
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
Microbiome 9 (1), 1-13, 2021
32021
Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ...
medRxiv, 2020
22020
Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
medRxiv, 2020
22020
Reference data based insights expand understanding of human metabolomes
JM Gauglitz, W Bittremieux, CL Williams, KC Weldon, MW Panitchpakdi, ...
22020
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
BioTechniques 70 (3), 149-159, 2021
12021
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
Genome biology 21 (1), 1-1, 2020
12020
Diversity and evolutionary relationships of bacteria affiliated with tropical seeds and seed-associated fungi
K Garcia, JP Shaffer, C Sarmiento, PC Zalamea, JW Dalling, A Davis, ...
PHYTOPATHOLOGY 103 (6), 48-48, 2013
12013
Germination of Phytophthora ramorum chlamydospores: a comparison of separation method and chlamydospore age
JP Shaffer, JL Parke
In: Frankel, SJ; Kliejunas, JT; Palmieri, KM; Alexander, JM tech. coords …, 2013
12013
Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ...
Genome research 31 (5), 934, 2021
2021
Correction for Vangay et al.,“Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (3), 2021
2021
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