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Justin P. Shaffer
Justin P. Shaffer
Dirección de correo verificada de health.ucsd.edu - Página principal
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Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
RC Kaplan, Z Wang, M Usyk, D Sotres-Alvarez, ML Daviglus, ...
Genome biology 20 (1), 1-21, 2019
612019
An endohyphal bacterium (Chitinophaga, Bacteroidetes) alters carbon source use by Fusarium keratoplasticum (F. solani species complex, Nectriaceae)
JP Shaffer, JM U'Ren, RE Gallery, DA Baltrus, AE Arnold
Frontiers in microbiology 8, 350, 2017
562017
Bacterial endosymbionts: master modulators of fungal phenotypes
SJ Araldi-Brondolo, J Spraker, JP Shaffer, EH Woytenko, DA Baltrus, ...
The Fungal Kingdom, 981-1004, 2017
362017
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
Msystems 5 (2), e00901-19, 2020
342020
Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves
JP Shaffer, C Sarmiento, PC Zalamea, RE Gallery, AS Davis, DA Baltrus, ...
Frontiers in Ecology and Evolution 4, 116, 2016
332016
Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, PL Chang, D Porter, T Phan, H Che, ...
Genome research 30 (6), 898-909, 2020
302020
Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds
JP Shaffer, PC Zalamea, C Sarmiento, RE Gallery, JW Dalling, AS Davis, ...
Fungal Ecology 36, 117-127, 2018
162018
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ...
Microbiome 9 (1), 1-15, 2021
132021
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ...
Microbiome 9 (1), 1-13, 2021
122021
Microbiome metadata standards: report of the National Microbiome Data Collaborative’s Workshop and follow-on activities
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (1), e01194-20, 2021
112021
Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment
C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ...
medRxiv, 2020
112020
Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants
YM Li, JP Shaffer, B Hall, H Ko
Plos one 14 (10), e0224417, 2019
102019
Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo …
Z Chen, L Pham, TC Wu, G Mo, Y Xia, P Chang, D Porter, T Phan, H Che, ...
BioRxiv, 852947, 2019
92019
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ...
BioTechniques 70 (3), 149-159, 2021
72021
OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures
Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ...
bioRxiv, 2021
72021
Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome. mSystems, 5 (2), e00901-19
BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ...
72020
Reference data based insights expand understanding of human metabolomes
JM Gauglitz, W Bittremieux, CL Williams, KC Weldon, MW Panitchpakdi, ...
62020
Feasibility of SARS-CoV-2 virus detection from consumer-grade cotton swabs
JJ Minich, F Ali, C Marotz, P Belda-Ferre, JP Shaffer, CS Carpenter, ...
medRxiv, 2020
52020
Multi-omics profiling of Earth’s biomes reveals that microbial and metabolite composition are shaped by the environment
JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ...
bioRxiv, 2021
42021
Development of an open-sourced automated ultrasonic-assisted soldering system
J Shaffer, K Maassen, C Wilson, P Tilton, L Thompson, H Choi, J Bostwick
Journal of Manufacturing Processes 47, 284-290, 2019
42019
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Artículos 1–20