| Analysis of circulating tumor DNA to monitor metastatic breast cancer SJ Dawson, DWY Tsui, M Murtaza, H Biggs, OM Rueda, SF Chin, ... New England Journal of Medicine 368 (13), 1199-1209, 2013 | 2461 | 2013 |
| Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs CT Saunders, WSW Wong, S Swamy, J Becq, LJ Murray, RK Cheetham Bioinformatics 28 (14), 1811-1817, 2012 | 1695 | 2012 |
| Factors influencing success of clinical genome sequencing across a broad spectrum of disorders JC Taylor, HC Martin, S Lise, J Broxholme, JB Cazier, A Rimmer, ... Nature genetics 47 (7), 717-726, 2015 | 402 | 2015 |
| Monitoring chronic lymphocytic leukemia progression by whole genome sequencing reveals heterogeneous clonal evolution patterns A Schuh, J Becq, S Humphray, A Alexa, A Burns, R Clifford, SM Feller, ... Blood, The Journal of the American Society of Hematology 120 (20), 4191-4196, 2012 | 379 | 2012 |
| Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ... Cell 148 (4), 780-791, 2012 | 359 | 2012 |
| Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma CS Ross-Innes, J Becq, A Warren, RK Cheetham, H Northen, ... Nature genetics 47 (9), 1038-1046, 2015 | 299 | 2015 |
| Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis CU Köser, JM Bryant, J Becq, ME Török, MJ Ellington, MA Marti-Renom, ... New England journal of medicine 369 (3), 290-292, 2013 | 262 | 2013 |
| Statistical inference of the time-varying structure of gene-regulation networks S Lebre, J Becq, F Devaux, MPH Stumpf, G Lelandais BMC systems biology 4, 1-16, 2010 | 216 | 2010 |
| Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli J Becq, MC Gutierrez, V Rosas-Magallanes, J Rauzier, B Gicquel, ... Molecular biology and evolution 24 (8), 1861-1871, 2007 | 181 | 2007 |
| Clinical whole-genome sequencing from routine formalin-fixed, paraffin-embedded specimens: pilot study for the 100,000 Genomes Project P Robbe, N Popitsch, SJL Knight, P Antoniou, J Becq, M He, A Kanapin, ... Genetics in Medicine 20 (10), 1196-1205, 2018 | 144 | 2018 |
| Genomic variation among contemporary Pseudomonas aeruginosa isolates from chronically infected cystic fibrosis patients JCS Chung, J Becq, L Fraser, O Schulz-Trieglaff, NJ Bond, J Foweraker, ... Journal of bacteriology 194 (18), 4857-4866, 2012 | 108 | 2012 |
| Horizontally acquired genomic islands in the tubercle bacilli J Jang, J Becq, B Gicquel, P Deschavanne, O Neyrolles Trends in microbiology 16 (7), 303-308, 2008 | 79 | 2008 |
| A benchmark of parametric methods for horizontal transfers detection J Becq, C Churlaud, P Deschavanne PLoS One 5 (4), e9989, 2010 | 78 | 2010 |
| Rapid single-colony whole-genome sequencing of bacterial pathogens CU Köser, LJ Fraser, A Ioannou, J Becq, MJ Ellington, MTG Holden, ... Journal of Antimicrobial Chemotherapy 69 (5), 1275-1281, 2014 | 75 | 2014 |
| Whole-genome sequencing of chronic lymphocytic leukaemia reveals distinct differences in the mutational landscape between IgHV mut and IgHV unmut subgroups A Burns, R Alsolami, J Becq, B Stamatopoulos, A Timbs, D Bruce, ... Leukemia 32 (2), 332-342, 2018 | 72 | 2018 |
| Whole genome sequencing of chronic lymphocytic leukemia reveals distinct differences in the mutational landscape between IgHV (mut) and IgHV (unmut) subgroups. A Burns, R Alsolami, J Becq, A Timbs, D Bruce, P Robbe, D Vavoulis, ... Leukemia, 2017 | 72 | 2017 |
| Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus LV Mallet, J Becq, P Deschavanne BMC genomics 11, 1-13, 2010 | 51 | 2010 |
| Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome F Favero, N McGranahan, M Salm, NJ Birkbak, JZ Sanborn, SC Benz, ... Annals of Oncology 26 (5), 880-887, 2015 | 44 | 2015 |
| Epigenetic regulator genes direct lineage switching in MLL/AF4 leukemia R Tirtakusuma, K Szoltysek, P Milne, VV Grinev, A Ptasinska, PS Chin, ... Blood, The Journal of the American Society of Hematology 140 (17), 1875-1890, 2022 | 32 | 2022 |
| Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma EA Raiber, D Beraldi, S Martínez Cuesta, GR McInroy, Z Kingsbury, ... NPJ Genomic Medicine 2 (1), 6, 2017 | 29 | 2017 |
