| DEGseq: an R package for identifying differentially expressed genes from RNA-seq data L Wang, Z Feng, X Wang, X Wang, X Zhang Bioinformatics 26 (1), 136-138, 2010 | 3867 | 2010 |
| Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ... Nature biotechnology 30 (12), 1232-1239, 2012 | 382 | 2012 |
| Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae J Li, JW Li, Z Feng, J Wang, H An, Y Liu, Y Wang, K Wang, X Zhang, ... PLoS pathogens 12 (7), e1005762, 2016 | 115 | 2016 |
| Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases EE Schadt, O Banerjee, G Fang, Z Feng, WH Wong, X Zhang, A Kislyuk, ... Genome research 23 (1), 129-141, 2013 | 113 | 2013 |
| Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic Z Feng, G Fang, J Korlach, T Clark, K Luong, X Zhang, W Wong, E Schadt PLoS computational biology 9 (3), e1002935, 2013 | 75 | 2013 |
| Identifying differentially spliced genes from two groups of RNA-seq samples W Wang, Z Qin, Z Feng, X Wang, X Zhang Gene 518 (1), 164-170, 2013 | 70 | 2013 |
| qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data Z Feng, J Li, JR Zhang, X Zhang Nucleic acids research 42 (22), 13488-13499, 2014 | 27 | 2014 |
| Detecting and phasing minor single-nucleotide variants from long-read sequencing data Z Feng, J Clemente, B Wong, E Schadt Nature Communications 12, 3032, 2021 | 22 | 2021 |
| Transcriptional repressor PtvR regulates phenotypic tolerance to vancomycin in Streptococcus pneumoniae X Liu, JW Li, Z Feng, Y Luo, JW Veening, JR Zhang Journal of bacteriology 199 (14), 10.1128/jb. 00054-17, 2017 | 22 | 2017 |
| A review on the processing and analysis of next-generation RNA-seq data X Wang, XW Wang, LK Wang, ZX Feng, XG Zhang Prog Biochem Biophys 5, 834-846, 2010 | 18 | 2010 |
| Erratum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing (Nature Biotechnology (2012) 30 (1232-1239)) G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ... Nature biotechnology 31 (6), 566, 2013 | 5 | 2013 |
| Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing. G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ... Nature Biotechnology 31 (6), 2013 | 2 | 2013 |
| Correction: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing G Fang, D Munera, DI Friedman, A Mandlik, MC Chao, O Banerjee, ... Nature Biotechnology 31 (6), 566-566, 2013 | | 2013 |
| Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Z Feng, G Fang, J Korlach, T Clark, K Luong | | 2013 |
