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Xue Lei
Xue Lei
Sanford Burnham Prebys Medical Discovery Institute
Verified email at sbpdiscovery.org
Title
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Cited by
Year
CASTp 3.0: computed atlas of surface topography of proteins
W Tian, C Chen, X Lei, J Zhao, J Liang
Nucleic acids research 46 (W1), W363-W367, 2018
15912018
Mitochondria-to-nucleus retrograde signaling drives formation of cytoplasmic chromatin and inflammation in senescence
MG Vizioli, T Liu, KN Miller, NA Robertson, K Gilroy, AB Lagnado, ...
Genes & development 34 (5-6), 428-445, 2020
2252020
BRD4-mediated repression of p53 is a target for combination therapy in AML
AL Latif, A Newcombe, S Li, K Gilroy, NA Robertson, X Lei, HJS Stewart, ...
Nature communications 12 (1), 241, 2021
462021
Apoptotic stress causes mtDNA release during senescence and drives the SASP
S Victorelli, H Salmonowicz, J Chapman, H Martini, MG Vizioli, JS Riley, ...
Nature 622 (7983), 627-636, 2023
452023
Biological Sources of Intrinsic and Extrinsic Noise in cI Expression of Lysogenic Phage Lambda
X Lei, W Tian, H Zhu, T Chen, P Ao
Scientific reports 5 (1), 13597, 2015
342015
Probabilistic control of HIV latency and transactivation by the Tat gene circuit
Y Cao, X Lei, RM Ribeiro, AS Perelson, J Liang
Proceedings of the National Academy of Sciences 115 (49), 12453-12458, 2018
242018
A knot polynomial invariant for analysis of topology of RNA stems and protein disulfide bonds
W Tian, X Lei, LH Kauffman, J Liang
Computational and Mathematical Biophysics 5 (1), 21-30, 2017
142017
A JAK/STAT-mediated inflammatory signaling cascade drives oncogenesis in AF10-rearranged AML
BR Chen, A Deshpande, K Barbosa, M Kleppe, X Lei, N Yeddula, PS Vela, ...
Blood, The Journal of the American Society of Hematology 137 (24), 3403-3415, 2021
132021
Loop extrusion promotes an alternate pathway for isotype switching
HM Shen, R Wuerffel, JF Cantillo, S Priyadarshi, X Lei, J Liang, YL Wu, ...
Cell reports 37 (8), 2021
82021
An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation
KH Bhat, S Priyadarshi, S Naiyer, X Qu, H Farooq, E Kleiman, J Xu, X Lei, ...
Nature communications 14 (1), 1225, 2023
72023
An Igh novel enhancer modulates antigen receptor diversity by determining locus conformation
KH Bhat, S Priyardarshi, S Naiyer, X Qu, H Farooq, E Kleiman, J Xu, X Lei, ...
bioRxiv, 2022.05. 23.492988, 2022
32022
Structure-based method for predicting deleterious missense snps
B Wang, X Lei, W Tian, A Perez-Rathke, Y Tseng, J Liang
Biophysical Journal 116 (3), 423a-424a, 2019
32019
Understand the noise of CI expression in phage λ lysogen
H Zhu, T Chen, X Lei, W Tian, Y Cao, P Ao
Proceedings of the 31st Chinese Control Conference, 7432-7436, 2012
32012
Extrinsic vs. intrinsic noises in Phage lambda genetic switch
W Tian, H Zhu, X Lei, P Ao
2011 IEEE International Conference on Systems Biology (ISB), 67-71, 2011
32011
SeqMapPDB: A Standalone Pipeline to Identify Representative Structures of Protein Sequences and Mapping Residue Indices in Real-Time at Proteome Scale
B Wang, X Lei, W Tian, A Perez-Rathke, YY Tseng, J Liang
arXiv preprint arXiv:2202.11551, 2022
22022
Transcriptional control of leukemogenesis by the chromatin reader SGF29
K Barbosa, A Deshpande, M Perales, P Xiang, R Murad, AB Pramod, ...
Blood 143 (8), 697-712, 2024
12024
Apoptotic stress causes mtDNA release during senescence and drives the SASP (vol 622, pg 627, 2023)
S Victorelli, H Salmonowicz, J Chapman, H Martini, MG Vizioli, JS Riley, ...
Nature 625 (7995), E15-E15, 2024
12024
Structure-based pathogenicity relationship identifier for predicting effects of single missense variants and discovery of higher-order cancer susceptibility clusters of mutations
B Wang, X Lei, W Tian, A Perez-Rathke, YY Tseng, J Liang
Briefings in Bioinformatics 24 (4), bbad206, 2023
12023
Histone chaperone HIRA, Promyelocytic Leukemia (PML) protein and p62/SQSTM1 coordinate to regulate inflammation during cell senescence and aging.
N Dasgupta, X Lei, R Arnold, MG Teneche, KN Miller, A Rajesh, A Davis, ...
bioRxiv, 2023.06. 24.546372, 2023
12023
Structure-Based Pathogenicity Relationship Identifier (SPRI): A Novel Structure-Guided Method to Evaluate Pathological Effect of Missense Mutations
B Wang, X Lei, W Tian, A Perez-Rathke, YY Tseng, J Liang
bioRxiv, 2022.09. 27.508720, 2022
12022
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