Sayed Mohammad Ebrahim Sahraeian
Sayed Mohammad Ebrahim Sahraeian
Bioinformatics Scientist, Roche Sequencing Solutions
Verified email at - Homepage
Cited by
Cited by
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
NATURE BIOTECHNOLOGY 38 (11), 1357-1357, 2020
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
SME Sahraeian, M Mohiyuddin, R Sebra, H Tilgner, PT Afshar, KF Au, ...
Nature communications 8 (1), 1-15, 2017
Contourlet-based image watermarking using optimum detector in a noisy environment
MA Akhaee, SME Sahraeian, F Marvasti
IEEE Transactions on Image Processing 19 (4), 967-980, 2009
SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks
SME Sahraeian, BJ Yoon
PloS one 8 (7), e67995, 2013
Robust scaling-based image watermarking using maximum-likelihood decoder with optimum strength factor
MA Akhaee, SME Sahraeian, B Sankur, F Marvasti
IEEE Transactions on Multimedia 11 (5), 822-833, 2009
Deep convolutional neural networks for accurate somatic mutation detection
SME Sahraeian, R Liu, B Lau, K Podesta, M Mohiyuddin, HYK Lam
Nature communications 10 (1), 1-10, 2019
Digital genotyping of sorghum–a diverse plant species with a large repeat-rich genome
DT Morishige, PE Klein, JL Hilley, SME Sahraeian, A Sharma, JE Mullet
Bmc Genomics 14 (1), 1-19, 2013
Blind image watermarking using a sample projection approach
MA Akhaee, SME Sahraeian, C Jin
IEEE Transactions on Information Forensics and Security 6 (3), 883-893, 2011
A network synthesis model for generating protein interaction network families
SME Sahraeian, BJ Yoon
PloS one 7 (8), e41474, 2012
Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor
YH Wang, HD Upadhyaya, AM Burrell, SME Sahraeian, RR Klein, ...
G3: Genes| Genomes| Genetics 3 (5), 783-793, 2013
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature Biotechnology 40 (5), 672-680, 2022
precisionFDA Truth Challenge V2: Calling variants from short-and long-reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
bioRxiv, 2020
PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences
SME Sahraeian, BJ Yoon
Nucleic acids research 38 (15), 4917-4928, 2010
SIFTER search: a web server for accurate phylogeny-based protein function prediction
SM Sahraeian, KR Luo, SE Brenner
Nucleic acids research 43 (W1), W141-W147, 2015
A novel low-complexity HMM similarity measure
SME Sahraeian, BJ Yoon
IEEE Signal Processing Letters 18 (2), 87-90, 2010
Wavelet-based 2-D ECG data compression method using SPIHT and VQ coding
SME Sahraeian, E Fatemizadeh
EUROCON, 2007. The International Conference on" Computer as a Tool", 133-137, 2007
Comparative analysis of biological networks: Hidden markov model and markov chain-based approach
BJ Yoon, X Qian, SME Sahraeian
IEEE Signal Processing Magazine 29 (1), 22-34, 2011
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing
LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ...
Nature Biotechnology 39 (9), 1151-1160, 2021
RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks
SME Sahraeian, BJ Yoon
Bioinformatics 28 (16), 2129-2136, 2012
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