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Pedro A. Saa
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Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks
P Saa, L Nielsen
Biotechnology Advances, 2017
1352017
A multi-tissue genome-scale metabolic modeling framework for the analysis of whole plant systems
C Gomes de Oliveira Dal'Molin, LE Quek, PA Saa, LK Nielsen
Frontiers in plant science 6, 111599, 2015
1102015
Construction of feasible and accurate kinetic models of metabolism: A Bayesian approach
PA Saa, LK Nielsen
Scientific Reports 6, 29635, 2016
772016
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks
PA Saa, LK Nielsen
Bioinformatics 32 (15), 2330-2337, 2016
482016
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions
P Saa, L Nielsen
PLOS Computational Biology 11 (4), 2015
372015
Effective dissolved oxygen control strategy for high-cell-density cultures
M Cárcamo, P Saa, J Torres, S Torres, P Mandujano, JRP Correa, ...
IEEE Latin America Transactions 12 (3), 389-394, 2014
352014
Modeling oxygen dissolution and biological uptake during pulse oxygen additions in oenological fermentations
PA Saa, MI Moenne, JR Pérez-Correa, E Agosin
Bioprocess and biosystems engineering 35, 1167-1178, 2012
322012
Modeling Approaches for Probing Cross-Feeding Interactions in the Human Gut Microbiome
PA Saa, A Urrutia, C Silva-Andrade, AJ Martín, D Garrido
Computational and Structural Biotechnology Journal 20, 79-89, 2021
292021
Build Your Bioprocess on a Solid Strain—β-Carotene Production in Recombinant Saccharomyces cerevisiae
J López, VF Cataldo, M Peña, PA Saa, F Saitua, M Ibaceta, E Agosin
Frontiers in bioengineering and biotechnology 7, 171, 2019
292019
Oxygen incorporation and dissolution during industrial-scale red wine fermentations
MI Moenne, P Saa, VF Laurie, JR Pérez-Correa, E Agosin
Food and bioprocess technology 7, 2627-2636, 2014
282014
Engineering Saccharomyces cerevisiae for the Overproduction of β-Ionone and Its Precursor β-Carotene
J López, D Bustos, C Camilo, N Arenas, PA Saa, E Agosin
Frontiers in Bioengineering and Biotechnology 8, 578793, 2020
272020
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models
PA Saa, LK Nielsen
Bioinformatics 32 (24), 3807-3814, 2016
232016
Inferring composition and function of the human gut microbiome in time and space: A review of genome-scale metabolic modelling tools
Á Altamirano, PA Saa, D Garrido
Computational and Structural Biotechnology Journal 18, 2020
212020
Contextualized genome-scale model unveils high-order metabolic effects of the specific growth rate and oxygenation level in recombinant Pichia pastoris
P Torres, PA Saa, J Albiol, P Ferrer, E Agosin
Metabolic Engineering Communications, e00103, 2019
202019
Improved calibration of a solid substrate fermentation model
J Sacher, P Saa, M Cárcamo, J López, CA Gelmi, R Pérez-Correa
Electronic Journal of Biotechnology 14 (5), 7-7, 2011
182011
A robust hybrid observer for monitoring high-cell density cultures exhibiting overflow metabolism
L Bárzaga-Martell, M Duarte-Mermoud, F Ibáñez-Espinel, ...
Journal of Process Control 104, 112-125, 2021
142021
Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells
B Hirmas, N Gasaly, G Orellana, M Vega-Sagardía, P Saa, M Gotteland, ...
mSystems, e00646-22, 2022
132022
Expanding metabolic capabilities using novel pathway designs: computational tools and case studies
PA Saa, MP Cortés, J López, D Bustos, A Maass, E Agosin
Biotechnology Journal, 2019
122019
Impact of carbon dioxide injection on oxygen dissolution rate during oxygen additions in a bubble column
PA Saa, JR Pérez-Correa, D Celentano, E Agosin
Chemical engineering journal 232, 157-166, 2013
122013
From reconstruction to C4 metabolic engineering: a case study for overproduction of polyhydroxybutyrate in bioenergy grasses
C Gomes de Oliveira Dal'Molin, LE Quek, PA Saa, LK Nielsen
Plant Science, 2018
92018
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