Debora Marks

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Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Thomas A. HopfScientific ConsultantVerified email at thomashopf.com
Anton EnrightGroup Leader, Department of Pathology, University of CambridgeVerified email at cam.ac.uk
John IngrahamGenerate Biomedicines, IncVerified email at csail.mit.edu
Anna G. GreenDepartment of Biomedical Informatics, Harvard Medical SchoolVerified email at hms.harvard.edu
Charlotta ScharfeGraduate Student in Bioinformatics, University of TubingenVerified email at informatik.uni-tuebingen.de
Doron BetelAssistant Professor of Computational Biomedicine, Weill Cornell Medical CollegeVerified email at med.cornell.edu
Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
Christina LeslieMemorial Sloan-Kettering Cancer CenterVerified email at cbio.mskcc.org
James J. RussoResearch Scientist, Associate DirectorVerified email at columbia.edu
Andrea PagnaniProfessor at DISAT - Politecnico di Torino, and PI at the IIGMVerified email at polito.it
Sébastien PfefferInstitut de Biologie Moléculaire et Cellulaire, CNRSVerified email at unistra.fr
Martin WeigtSorbonne Université Paris (former Université Pierre & Marie Curie)Verified email at upmc.fr
Bryan J. LuntPhD Candidate, University of Illinois as Urbana-ChampaignVerified email at illinois.edu
Erik Larsson LekholmSahlgrenska Academy, University of GothenburgVerified email at cbio.mskcc.org
Burkhard RostProfessor of Computer Science & Computational Biology & Bioinformatics, TUM, MunichVerified email at tum.de
Martin L MillerCancer Research UK, Cambridge Institute, University of CambridgeVerified email at cruk.cam.ac.uk
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Aaron ArveyArvey ConsultingVerified email at ucsf.edu
Kenneth S. Kosik UC Santa BarbaraVerified email at lifesci.ucsb.edu

Debora Marks

Systems Biology, Harvard Medical School

Verified email at hms.harvard.edu - Homepage

machine learning genomics drug design statistical inference protein folding & design


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Human microRNA targets B John, AJ Enright, A Aravin, T Tuschl, C Sander, DS Marks PLoS biol 2 (11), e363, 2004	3900	2004
MicroRNA targets in Drosophila AJ Enright, B John, U Gaul, T Tuschl, C Sander, DS Marks Genome biology 5 (1), 1-1, 2003	2930	2003
The microRNA. org resource: targets and expression D Betel, M Wilson, A Gabow, DS Marks, C Sander Nucleic acids research 36 (suppl_1), D149-D153, 2008	2531	2008
Identification of virus-encoded microRNAs S Pfeffer, M Zavolan, FA Grässer, M Chien, JJ Russo, J Ju, B John, ... Science 304 (5671), 734-736, 2004	1838	2004
The small RNA profile during Drosophila melanogaster development AA Aravin, M Lagos-Quintana, A Yalcin, M Zavolan, D Marks, B Snyder, ... Developmental cell 5 (2), 337-350, 2003	1140	2003
Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011	982	2011
miR-122, a mammalian liver-specific microRNA, is processed from hcr mRNA and maydownregulate the high affinity cationic amino acid transporter CAT-1 J Chang, E Nicolas, D Marks, C Sander, A Lerro, MA Buendia, C Xu, ... RNA biology 1 (2), 106-113, 2004	902	2004
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PloS one 6 (12), e28766, 2011	874	2011
Protein structure prediction from sequence variation DS Marks, TA Hopf, C Sander Nature biotechnology 30 (11), 1072-1080, 2012	535	2012
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs AA Khan, D Betel, ML Miller, C Sander, CS Leslie, DS Marks Nature biotechnology 27 (6), 549-555, 2009	525	2009
MicroRNA profiling of the murine hematopoietic system S Monticelli, KM Ansel, C Xiao, ND Socci, AM Krichevsky, TH Thai, ... Genome biology 6 (8), 1-15, 2005	501	2005
Three-dimensional structures of membrane proteins from genomic sequencing TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks Cell 149 (7), 1607-1621, 2012	483	2012
miRcode: a map of putative microRNA target sites in the long non-coding transcriptome A Jeggari, DS Marks, E Larsson Bioinformatics 28 (15), 2062-2063, 2012	419	2012
The developmental miRNA profiles of zebrafish as determined by small RNA cloning PY Chen, H Manninga, K Slanchev, M Chien, JJ Russo, J Ju, R Sheridan, ... Genes & development 19 (11), 1288-1293, 2005	400	2005
Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development D Leaman, PY Chen, J Fak, A Yalcin, M Pearce, U Unnerstall, DS Marks, ... Cell 121 (7), 1097-1108, 2005	381	2005
Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... Elife 3, e03430, 2014	353	2014
Target mRNA abundance dilutes microRNA and siRNA activity A Arvey, E Larsson, C Sander, CS Leslie, DS Marks Molecular systems biology 6 (1), 363, 2010	331	2010
MicroRNA control of protein expression noise JM Schmiedel, SL Klemm, Y Zheng, A Sahay, N Blüthgen, DS Marks, ... Science 348 (6230), 128-132, 2015	306	2015
Pathway and network analysis of cancer genomes P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ... Nature methods 12 (7), 615, 2015	282	2015
Mutation effects predicted from sequence co-variation TA Hopf, JB Ingraham, FJ Poelwijk, CPI Schärfe, M Springer, C Sander, ... Nature biotechnology 35 (2), 128-135, 2017	254	2017

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