Yongchao Liu

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Bertil SchmidtProfessor of Computer Science, JGU MainzVerified email at uni-mainz.de
Douglas L. MaskellNanyang Technological University (NTU)Verified email at ntu.edu.sg
Srinivas AluruRegents' Professor and Senior Associate Dean, College of Computing, Georgia TechVerified email at cc.gatech.edu
Jan SchröderPostdoc researcher, Monash UniversityVerified email at monash.edu
Adrianto WirawanNanyang Technological University, Singapore; Johannes Gutenberg-Universität Mainz, GermanyVerified email at adriantowirawan.com
Peng ZhangProfessor, Guangzhou UniversityVerified email at gzhu.edu.cn
Tom HankelnJohannes Gutenberg University MainzVerified email at uni-mainz.de
Chengying HuanInstitute of Software, Chinese Academy of SciencesVerified email at iscas.ac.cn
Hang LiuRutgers, The State University of New JerseyVerified email at scarletmail.rutgers.edu
Tony PanEmory UniversityVerified email at emory.edu
Shuaiwen Leon SongVP of Research, Together.ai; Ex-Microsoft; Tenured ProfessorVerified email at together.ai
Jorge González-DomínguezCITIC, University of A CoruñaVerified email at udc.es
Bernt PoppBerlin Institute of Health at Charité, Universitätsmedizin Berlin, Center of Functional GenomicsVerified email at charite.de
Sriram P ChockalingamSenior Research ScientistVerified email at gatech.edu
Sharma V. ThankachanNorth Carolina State UniversityVerified email at ncsu.edu
Houyi LiAlibaba GroupVerified email at m.fudan.edu.cn
Yun YueAnt GroupVerified email at antgroup.com
Yun ZhuZhejiang UniversityVerified email at zju.edu.cn
Boci PengPeking UniversityVerified email at stu.pku.edu.cn
Jinlei JiangDepartment of Computer Science and Technology, Tsinghua UniversityVerified email at tsinghua.edu.cn

Yongchao Liu

Staff Engineer, Ant Group (China)

Verified email at antgroup.com - Homepage

Parallel computing Machine learning Algorithms Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units Y Liu, D Maskell, B Schmidt BMC Research Notes 2 (1), 73, 2009	365	2009
Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data Y Liu, J Schröder, B Schmidt Bioinformatics 29 (3), 308-315, 2013	342	2013
CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions Y Liu, A Wirawan, B Schmidt BMC Bioinformatics 14 (1), 117, 2013	301	2013
MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities Y Liu, B Schmidt, DL Maskell Bioinformatics 26 (16), 1958-1964, 2010	287	2010
CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions Y Liu, B Schmidt, D Maskell BMC Research Notes 3 (1), 93, 2010	264	2010
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform Y Liu, B Schmidt, DL Maskell Bioinformatics 28 (14), 1830-1837, 2012	224	2012
Long read alignment based on maximal exact match seeds Y Liu, B Schmidt Bioinformatics 28 (18), i318-i324, 2012	137	2012
MSA-CUDA: multiple sequence alignment on graphics processing units with CUDA Y Liu, B Schmidt, DL Maskell 20th IEEE International Conference on Application-specific Systems …, 2009	117	2009
Parallelized short read assembly of large genomes using de Bruijn graphs Y Liu, B Schmidt, D Maskell BMC Bioinformatics 12 (1), 354, 2011	107	2011
CUDA-MEME: accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units Y Liu, B Schmidt, W Liu, DL Maskell Pattern Recognition Letters 31 (14), 2170-2177, 2010	99	2010
CUSHAW2-GPU: empowering faster gapped short-read alignment using GPU computing Y Liu, B Schmidt IEEE Design & Test 31 (1), 31-39, 2013	95	2013
SWAPHI: Smith-Waterman protein database search on Xeon Phi coprocessors Y Liu, B Schmidt 2014 IEEE 25th International Conference on Application-Specific Systems …, 2014	87	2014
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI Y Liu, B Schmidt, D Maskell BMC Bioinformatics 12 (1), 85, 2011	84	2011
CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding Y Liu, B Popp, B Schmidt PloS one 9 (1), e86869, 2014	77	2014
LightSpMV: faster CSR-based sparse matrix-vector multiplication on CUDA-enabled GPUs Y Liu, B Schmidt 2015 IEEE 26th International Conference on Application-specific Systems …, 2015	76	2015
SWAPHI-LS: Smith-Waterman algorithm on Xeon Phi coprocessors for long DNA sequences Y Liu, TT Tran, F Lauenroth, B Schmidt 2014 IEEE International Conference on Cluster Computing, 257-265, 2014	72	2014
All-Food-Seq (AFS): a quantifiable screen for species in biological samples by deep DNA sequencing F Ripp, CF Krombholz, Y Liu, M Weber, A Schäfer, B Schmidt, R Köppel, ... BMC Genomics 15 (1), 639, 2014	66	2014
CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments L Kuttippurathu, M Hsing, Y Liu, B Schmidt, DL Maskell, K Lee, A He, ... Bioinformatics 27 (5), 715, 2011	62	2011
HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data A Wirawan, RS Harris, Y Liu, B Schmidt, J Schröder BMC Bioinformatics 15 (1), 131, 2014	46	2014
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations Y Liu, M Loewer, S Aluru, B Schmidt BMC Systems Biology 10, 215-229, 2016	45	2016

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