Alexander Artyomenko

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Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityDirección de correo verificada de gsu.edu
Pavel SkumsUniversity of ConnecticutDirección de correo verificada de uconn.edu
Ion MandoiuUniversity of ConnecticutDirección de correo verificada de engr.uconn.edu
Olga GlebovaUniversity of ConnecticutDirección de correo verificada de uconn.edu
Sergey KnyazevUniversity of California, Los AngelesDirección de correo verificada de ucla.edu
Nicholas MancusoAssociate Professor at Keck School of Medicine, University of Southern CaliforniaDirección de correo verificada de med.usc.edu
Viachaslau TsyvinaGeorgia State UniversityDirección de correo verificada de student.gsu.edu
David S. CampoCenters for Disease Control and Prevention, Division of Viral Hepatitis.Dirección de correo verificada de cdc.gov
Bassam TorkAssistant Professor of Computer Science, Al-Quds Open UniversityDirección de correo verificada de qou.edu
Eleazar EskinUniversity of California, Los AngelesDirección de correo verificada de cs.ucla.edu
Ren SunUniversity of California, Los AngelesDirección de correo verificada de mednet.ucla.edu
Catalin BarbacioruDirector, Bioinformatics at Guardant HealthDirección de correo verificada de guardanthealth.com
Darya ChudovaVP of Technology, Guardant HealthDirección de correo verificada de guardanthealth.com
Nicholas C. WuUniversity of Illinois at Urbana-ChampaignDirección de correo verificada de illinois.edu
Scott KopetzUniversity of Texas MD Anderson Cancer CenterDirección de correo verificada de mdanderson.org
Marwan FakihProfessor, City of Hope Comprehensive Cancer CenterDirección de correo verificada de coh.org
Adrian CaciulaColumbia UniversityDirección de correo verificada de columbia.edu
James LindsayAssociate Director of Knowledge Systems Group, Dana-Farber Cancer InstituteDirección de correo verificada de dfci.harvard.edu
Rachel O'NeillDirección de correo verificada de uconn.edu
Stephen R. FaircloughDepartment of Energy, Joint Genome InstituteDirección de correo verificada de lbl.gov

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Alexander Artyomenko

Bioinformatics Scientist at Guardant Health Inc.

Dirección de correo verificada de guardanthealth.com

Computer Science Bioinformatics Algorithms Graph Theory Programming


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Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel J Willis, MI Lefterova, A Artyomenko, PM Kasi, Y Nakamura, K Mody, ... Clinical Cancer Research 25 (23), 7035-7045, 2019	192	2019
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... Nucleic acids research 49 (17), e102-e102, 2021	41	2021
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows P Skums, N Mancuso, A Artyomenko, B Tork, I Mandoiu, Y Khudyakov, ... BMC bioinformatics 14, 1-13, 2013	39	2013
Inference of genetic relatedness between viral quasispecies from sequencing data O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ... BMC genomics 18, 81-88, 2017	30	2017
Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky Journal of Computational Biology 24 (6), 558-570, 2017	29	2017
Cliquesnv: Scalable reconstruction of intra-host viral populations from ngs reads S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ... BioRxiv, 264242, 2018	24	2018
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling P Skums, A Artyomenko, O Glebova, S Ramachandran, I Mandoiu, ... Bioinformatics 31 (5), 682-690, 2015	18	2015
CliqueSNV: an efficient noise reduction technique for accurate assembly of viral variants from NGS data S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... bioRxiv 264242, 2020	10	2020
Microsatellite instability detection by targeted sequencing of cell-free DNA A Artyomenko, M Sikora, M Lefterova, VM Raymond, D Gavino, ... Annals of Oncology 29, viii424, 2018	9	2018
kgem: An em-based algorithm for local reconstruction of viral quasispecies A Artyomenko, N Mancuso, A Zelikovsky, P Skums, I Măndoiu 2013 IEEE 3rd International Conference on Computational Advances in Bio and …, 2013	8	2013
Error correction of NGS reads from viral populations P Skums, A Artyomenko, O Glebova, DS Campo, Z Dimitrova, ... Computational Methods for Next Generation Sequencing Data Analysis, 329-353, 2016	6	2016
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning PI Baykal, A Artyomenko, S Ramachandran, Y Khudyakov, A Zelikovsky, ... 2017 IEEE 7th International Conference on Computational Advances in Bio and …, 2017	5	2017
kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data A Artyomenko, N Mancuso, P Skums, I Mandoiu, A Zelikovsky Proc. International Symposium Bioinformatics Research and Applications, 2013	4	2013
Analytical validation of MSI high detection with GuardantOMNI J Zhao, A Artyomenko, C Artieri, J Latham, SR Fairclough, C Barbacioru, ... Cancer Research 79 (13_Supplement), 1675-1675, 2019	2	2019
Reconstruction of infectious bronchitis virus quasispecies from ngs data B Tork, E Nenastyeva, A Artyomenko, N Mancuso, MI Khan, R O'Neill, ... Computational Methods for Next Generation Sequencing Data Analysis, 383-400, 2016	2	2016
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data P Skums, A Artyomenko, O Glebova, A Zelikovsky, DS Campo, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014	2	2014
Deterministic regression algorithm for transcriptome frequency estimation A Caciula, O Glebova, A Artyomenko, S Mangul, J Lindsay, II Măndoiu, ... 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014	2	2014
Transcriptome quantification and differential expression from NGS data O Glebova, Y Temate‐Tiagueu, A Caciula, S Al Seesi, A Artyomenko, ... Computational Methods for Next Generation Sequencing Data Analysis, 301-327, 2016	1	2016
Pooling Strategy for Massive Viral Sequencing P Skums, A Artyomenko, O Glebova, S Ramachandran, DS Campo, ... Computational Methods for Next Generation Sequencing Data Analysis, 57-83, 2016	1	2016
2SNV: Quasispecies reconstruction from PacBio reads A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky 2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015	1	2015

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