| ISiCLE: a quantum chemistry pipeline for establishing in silico collision cross section libraries SM Colby, DG Thomas, JR Nuñez, DJ Baxter, KR Glaesemann, JM Brown, ... Analytical chemistry 91 (7), 4346-4356, 2019 | 91 | 2019 |
| ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems CS Oehmen, DJ Baxter Bioinformatics 29 (6), 797-798, 2013 | 82 | 2013 |
| Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data WR Cannon, KH Jarman, BJM Webb-Robertson, DJ Baxter, CS Oehmen, ... Journal of proteome research 4 (5), 1687-1698, 2005 | 39 | 2005 |
| MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification A Kalyanaraman, WR Cannon, B Latt, DJ Baxter Bioinformatics 27 (21), 3072-3073, 2011 | 32 | 2011 |
| Large improvements in MS/MS-based peptide identification rates using a hybrid analysis WR Cannon, MM Rawlins, DJ Baxter, SJ Callister, MS Lipton, DA Bryant Journal of proteome research 10 (5), 2306-2317, 2011 | 24 | 2011 |
| Constrained de novo peptide identification via multi-objective optimization JM Malard, A Heredia-Langner, DJ Baxter, KH Jarman, WR Cannon 18th International Parallel and Distributed Processing Symposium, 2004 …, 2004 | 21 | 2004 |
| Prediction of metabolite concentrations, rate constants and post-translational regulation using maximum entropy-based simulations with application to central metabolism of … WR Cannon, JD Zucker, DJ Baxter, N Kumar, SE Baker, JM Hurley, ... Processes 6 (6), 63, 2018 | 17 | 2018 |
| Evaluation of the influence of amino acid composition on the propensity for collision-induced dissociation of model peptides using molecular dynamics simulations WR Cannon, D Taasevigen, DJ Baxter, J Laskin Journal of the American Society for Mass Spectrometry 18 (9), 1625-1637, 2007 | 16 | 2007 |
| A scalable parallel approach for peptide identification from large-scale mass spectrometry data G Kulkarni, A Kalyanaraman, WR Cannon, D Baxter 2009 International Conference on Parallel Processing Workshops, 423-430, 2009 | 12 | 2009 |
| ISiCLE: a molecular collision cross section calculation pipeline for establishing large in silico reference libraries for compound identification SM Colby, DG Thomas, JR Nunez, DJ Baxter, KR Glaesemann, JM Brown, ... arXiv preprint arXiv:1809.08378, 2018 | 7 | 2018 |
| Peptide identification via constrained multi‐objective optimization: Pareto‐based genetic algorithms JM Malard, A Heredia‐Langner, WR Cannon, R Mooney, DJ Baxter Concurrency and Computation: Practice and Experience 17 (14), 1687-1704, 2005 | 7 | 2005 |
| Comparison of optimal thermodynamic models of the tricarboxylic acid cycle from heterotrophs, cyanobacteria, and green sulfur bacteria DG Thomas, S Jaramillo-Riveri, DJ Baxter, WR Cannon The Journal of Physical Chemistry B 118 (51), 14745-14760, 2014 | 6 | 2014 |
| Proteotyping of microbial communities by optimization of tandem mass spectrometry data interpretation A Hugo, DJ Baxter, WR Cannon, A Kalyanaraman, G Kulkarni, ... Biocomputing 2012, 225-234, 2012 | 4 | 2012 |
| Applications in data-intensive computing AR Shah, JN Adkins, DJ Baxter, WR Cannon, DG Chavarria-Miranda, ... Advances in Computers 79, 1-70, 2010 | 3 | 2010 |
| Enumeration reduction algorithm for the characterization of multi-primary LED systems D Baxter, D Durmus, M Royer Lighting Research & Technology 55 (3), 242-257, 2023 | 2 | 2023 |
| Enabling High-throughput Atmospheric Simulations for Radionuclide Background and Source Estimation W Rosenthal, P Eslinger, B Schrom, D Baxter, H Miley AGU Fall Meeting Abstracts 2020, S050-02, 2020 | | 2020 |
| Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation of Neurospora Crassa using Maximum Entropy Optimizations and Reinforcement Learning WR Cannon, SR Britton, M Banwarth-Kuhn, M Alber, JM Hurley, ... Biophysical Journal 116 (3), 130a-131a, 2019 | | 2019 |
| Modeling the Mass Action Dynamics of Metabolism with Fluctuation Theorems and Maximum Entropy W Cannon, D Thomas, D Baxter, J Zucker, G Goh APS March Meeting Abstracts 2016, F41. 006, 2016 | | 2016 |
| Simulating Metabolism with Statistical Thermodynamics WR Cannon, DG Thomas, DJ Baxter Biophysical Journal 108 (2), 470a, 2015 | | 2015 |
| Analyzing Data for Systems Biology: Working at the Intersection of Thermodynamics and Data Analytics WR Cannon, DJ Baxter Pacific Northwest National Lab.(PNNL), Richland, WA (United States …, 2012 | | 2012 |
