Leonardo Trabuco
Leonardo Trabuco
Postdoctoral Research Fellow, University of Heidelberg
Verified email at bioquant.uni-heidelberg.de
Title
Cited by
Cited by
Year
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of computational chemistry 28 (16), 2618-2640, 2007
8102007
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
LG Trabuco, E Villa, K Mitra, J Frank, K Schulten
Structure 16 (5), 673-683, 2008
7022008
Structural insight into nascent polypeptide chain–mediated translational stalling
B Seidelt, CA Innis, DN Wilson, M Gartmann, JP Armache, E Villa, ...
Science 326 (5958), 1412-1415, 2009
2662009
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
E Villa, J Sengupta, LG Trabuco, J LeBarron, WT Baxter, TR Shaikh, ...
Proceedings of the National Academy of Sciences 106 (4), 1063-1068, 2009
2612009
Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography
LG Trabuco, E Villa, E Schreiner, CB Harrison, K Schulten
Methods 49 (2), 174-180, 2009
2532009
PepSite: prediction of peptide-binding sites from protein surfaces
LG Trabuco, S Lise, E Petsalaki, RB Russell
Nucleic acids research 40 (W1), W423-W427, 2012
1242012
Regulation of the protein-conducting channel by a bound ribosome
J Gumbart, LG Trabuco, E Schreiner, E Villa, K Schulten
Structure 17 (11), 1453-1464, 2009
1142009
The role of L1 stalk–tRNA interaction in the ribosome elongation cycle
LG Trabuco, E Schreiner, J Eargle, P Cornish, T Ha, Z Luthey-Schulten, ...
Journal of molecular biology 402 (4), 741-760, 2010
1122010
Dynamics of recognition between tRNA and elongation factor Tu
J Eargle, AA Black, A Sethi, LG Trabuco, Z Luthey-Schulten
Journal of molecular biology 377 (5), 1382-1405, 2008
832008
Protein-induced membrane curvature investigated through molecular dynamics flexible fitting
J Hsin, J Gumbart, LG Trabuco, E Villa, P Qian, CN Hunter, K Schulten
Biophysical journal 97 (1), 321-329, 2009
792009
ATP-sensitive K+ channels in renal mitochondria
DV Cancherini, LG Trabuco, NA Rebouças, AJ Kowaltowski
American Journal of Physiology-Renal Physiology 285 (6), F1291-F1296, 2003
772003
Molecular dissection of human Argonaute proteins by DNA shuffling
N Schürmann, LG Trabuco, C Bender, RB Russell, D Grimm
Nature structural & molecular biology 20 (7), 818, 2013
742013
Structural model and excitonic properties of the dimeric RC–LH1–PufX complex from Rhodobacter sphaeroides
M Şener, J Hsin, LG Trabuco, E Villa, P Qian, CN Hunter, K Schulten
Chemical physics 357 (1-3), 188-197, 2009
612009
Force-producing ADP state of myosin bound to actin
SF Wulf, V Ropars, S Fujita-Becker, M Oster, G Hofhaus, LG Trabuco, ...
Proceedings of the National Academy of Sciences 113 (13), E1844-E1852, 2016
572016
Structural insights into cognate versus near‐cognate discrimination during decoding
X Agirrezabala, E Schreiner, LG Trabuco, J Lei, RF Ortiz‐Meoz, ...
The EMBO journal 30 (8), 1497-1507, 2011
562011
Cryo‐electron microscopy modeling by the molecular dynamics flexible fitting method
KY Chan, LG Trabuco, E Schreiner, K Schulten
Biopolymers 97 (9), 678-686, 2012
542012
Recognition of the regulatory nascent chain TnaC by the ribosome
LG Trabuco, CB Harrison, E Schreiner, K Schulten
Structure 18 (5), 627-637, 2010
502010
Applications of the molecular dynamics flexible fitting method
LG Trabuco, E Schreiner, J Gumbart, J Hsin, E Villa, K Schulten
Journal of structural biology 173 (3), 420-427, 2011
402011
Molecular dynamics of EF‐G during translocation
W Li, LG Trabuco, K Schulten, J Frank
Proteins: Structure, Function, and Bioinformatics 79 (5), 1478-1486, 2011
392011
Stereochemical errors and their implications for molecular dynamics simulations
E Schreiner, LG Trabuco, PL Freddolino, K Schulten
BMC bioinformatics 12 (1), 1-9, 2011
382011
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Articles 1–20