Stephan Bernhart
Stephan Bernhart
Bioinformatik, Universitaet Leipzig
Verified email at
Cited by
Cited by
Signatures of mutational processes in human cancer
LB Alexandrov
nature 500 (7463), 415-21, 2013
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6 (1), 1-14, 2011
The vienna RNA websuite
AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker
Nucleic acids research 36 (suppl_2), W70-W74, 2008
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
The landscape of genomic alterations across childhood cancers
SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ...
Nature 555 (7696), 321-327, 2018
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9 (1), 1-13, 2008
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
Nature genetics 44 (12), 1316-1320, 2012
Thermodynamics of RNA–RNA binding
U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ...
Bioinformatics 22 (10), 1177-1182, 2006
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1 (1), 1-10, 2006
Alignment of RNA base pairing probability matrices
IL Hofacker, SHF Bernhart, PF Stadler
Bioinformatics 20 (14), 2222-2227, 2004
Local RNA base pairing probabilities in large sequences
SH Bernhart, IL Hofacker, PF Stadler
Bioinformatics 22 (5), 614-615, 2006
Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann
Genome research 26 (2), 256-262, 2016
Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma
J Okosun, RL Wolfson, J Wang, S Araf, L Wilkins, BM Castellano, ...
Nature genetics 48 (2), 183-188, 2016
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology 153 (1-2), 62-75, 2011
The ViennaRNA web services
AR Gruber, SH Bernhart, R Lorenz
RNA bioinformatics, 307-326, 2015
Variations on RNA folding and alignment: lessons from Benasque
AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ...
Journal of mathematical biology 56 (1), 129-144, 2008
RNAs everywhere: Genome‐wide annotation of structured RNAs
R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
A Donath, F Jühling, M Al-Arab, SH Bernhart, F Reinhardt, PF Stadler, ...
Nucleic acids research 47 (20), 10543-10552, 2019
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ...
Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015
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Articles 1–20