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Denis Bertrand
Denis Bertrand
Senior bioinformatician, SeqOne
Verified email at seqone.com
Title
Cited by
Cited by
Year
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
16622018
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic acids research 40 (22), 11189-11201, 2012
9412012
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
9142013
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
6462012
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
5802017
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2762015
Perspective on oncogenic processes at the end of the beginning of cancer genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell 173 (2), 305-320. e10, 2018
2702018
The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals
RS LaRue, SR Jónsson, KAT Silverstein, M Lajoie, D Bertrand, ...
BMC molecular biology 9 (1), 1-20, 2008
2082008
Cloning and variation of ground state intestinal stem cells
X Wang, Y Yamamoto, LH Wilson, T Zhang, BE Howitt, MA Farrow, F Kern, ...
Nature 522 (7555), 173-178, 2015
1712015
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li, ...
Nature biotechnology 37 (8), 937-944, 2019
1632019
The Opisthorchis viverrini genome provides insights into life in the bile duct
ND Young, N Nagarajan, SJ Lin, PK Korhonen, AR Jex, RS Hall, ...
Nature communications 5 (1), 1-11, 2014
1502014
Whole-genome reconstruction and mutational signatures in gastric cancer
N Nagarajan, D Bertrand, AM Hillmer, ZJ Zang, F Yao, PÉ Jacques, ...
Genome biology 13 (12), 1-10, 2012
1332012
Recurrent fusion genes in gastric cancer: CLDN18-ARHGAP26 induces loss of epithelial integrity
F Yao, JP Kausalya, YY Sia, ASM Teo, WH Lee, AGM Ong, Z Zhang, ...
Cell reports 12 (2), 272-285, 2015
1222015
Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles
D Bertrand, KR Chng, FG Sherbaf, A Kiesel, BKH Chia, YY Sia, SK Huang, ...
Nucleic acids research 43 (7), e44-e44, 2015
1102015
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
1072018
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
962021
Predicting cancer drug response using a recommender system
C Suphavilai, D Bertrand, N Nagarajan
Bioinformatics 34 (22), 3907-3914, 2018
952018
Large-scale whole-genome sequencing of three diverse Asian populations in Singapore
D Wu, J Dou, X Chai, C Bellis, A Wilm, CC Shih, WWJ Soon, N Bertin, ...
Cell 179 (3), 736-749. e15, 2019
912019
A Min ION™‐based pipeline for fast and cost‐effective DNA barcoding
A Srivathsan, B Baloğlu, W Wang, WX Tan, D Bertrand, AHQ Ng, ...
Molecular ecology resources 18 (5), 1035-1049, 2018
912018
Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study
M Mac Aogáin, R Chandrasekaran, AYH Lim, TB Low, GL Tan, T Hassan, ...
European Respiratory Journal 52 (1), 2018
892018
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