Sahar AL Seesi
Sahar AL Seesi
Associate Professor, Computer Science, Southern Connecticut State University
Verified email at
Cited by
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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
Journal of Experimental Medicine 211 (11), 2231-2248, 2014
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu
BMC genomics 15 (8), 1-10, 2014
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data
I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ...
Bioinformatics 33 (20), 3302-3304, 2017
Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
NK Jue, MB Murphy, SD Kasowitz, SM Qureshi, CJ Obergfell, S Elsisi, ...
BMC genomics 14 (1), 1-14, 2013
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons
AR Banday, M Baumgartner, S Al Seesi, DKP Karunakaran, A Venkatesh, ...
Cell cycle 13 (16), 2526-2541, 2014
An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads
S Mangul, A Caciula, S Al Seesi, D Brinza, AR Banday, R Kanadia
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells
M Baumgartner, AM Olthof, GS Aquino, KC Hyatt, C Lemoine, K Drake, ...
Development 145 (17), 2018
Minor splicing sn RNA s are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons
M Baumgartner, C Lemoine, S Al Seesi, DKP Karunakaran, N Sturrock, ...
Developmental neurobiology 75 (9), 895-907, 2015
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
S Mangul, A Caciula, S Al Seesi, D Brinza, I Mӑndoiu, A Zelikovsky
BMC genomics 15 (5), 1-11, 2014
Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development
DKP Karunakaran, S Al Seesi, AR Banday, M Baumgartner, A Olthof, ...
BMC genomics 17 (5), 477-492, 2016
Inferring metabolic pathway activity levels from RNA-Seq data
Y Temate-Tiagueu, S Al Seesi, M Mathew, I Mandric, A Rodriguez, ...
BMC genomics 17 (5), 493-503, 2016
Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses
J Duan, M Zhang, K Flock, SA Seesi, I Mandoiu, A Jones, E Johnson, ...
Epigenetics 13 (8), 793-807, 2018
Genomics-Guided Immunotherapy of Human Epithelial Ovarian Cancer
S Al Seesi, F Duan, II Mandoiu, PK Srivastava, A Kueck
Translational Cardiometabolic Genomic Medicine, 237-250, 2016
Improved algorithms for parsing ESLTAGs: A grammatical model suitable for RNA pseudoknots
S Rajasekaran, S Al Seesi, RA Ammar
IEEE/ACM transactions on computational biology and bioinformatics 7 (4), 619-627, 2010
Pseudoknot Identification through Learning TAGRNA
S Al Seesi, S Rajasekaran, R Ammar
IAPR International Conference on Pattern Recognition in Bioinformatics, 132-143, 2008
Dosage Compensation and Gene Expression of the X Chromosome in Sheep
J Duan, K Flock, N Jue, M Zhang, A Jones, SA Seesi, I Mandoiu, S Pillai, ...
G3: Genes, Genomes, Genetics 9 (1), 305-314, 2019
Transcriptome reconstruction and quantification from RNA sequencing Data
S Al Seesi, S Mangul, A Caciula, A Zelikovsky, I Măndoiu
Genome analysis: current procedures and applications, 39, 2014
Workshop: Inference of allele specific expression levels from RNA-Seq data
S Al Seesi, I Măndoiu
2012 IEEE 2nd International Conference on Computational Advances in Bio and …, 2012
Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots
S Rajasekaran, S Al Seesi, R Ammar
International Symposium on Bioinformatics Research and Applications, 135-147, 2009
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