Toni Hermoso Pulido
Toni Hermoso Pulido
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An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
J Tapial, KCH Ha, T Sterne-Weiler, A Gohr, U Braunschweig, ...
Genome research 27 (10), 1759-1768, 2017
LncATLAS database for subcellular localization of long noncoding RNAs
D Mas-Ponte, J Carlevaro-Fita, E Palumbo, TH Pulido, R Guigo, ...
Rna 23 (7), 1080-1087, 2017
Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life
A Figueras, D Robledo, A Corvelo, M Hermida, P Pereiro, JA Rubiolo, ...
DNA research 23 (3), 181-192, 2016
A novel subfamily of mouse cytosolic carboxypeptidases
E Kalinina, R Biswas, I Berezniuk, A Hermoso, FX Aviles, LD Flicker
The FASEB Journal 21 (3), 836-850, 2007
GREENC: a Wiki-based database of plant lncRNAs
AP Gallart, AH Pulido, IAM de Lagrán, W Sanseverino, RA Cigliano
Nucleic acids research 44 (Database issue), D1161, 2016
Nnal‐like proteins are active metallocarboxypeptidases of a new and diverse M14 subfamily
MR dela Vega, RG Sevilla, A Hermoso, J Lorenzo, S Tanco, A Diez, ...
The FASEB Journal 21 (3), 851-865, 2007
GREENC: a Wiki-based database of plant lncRNAs
A Paytuví Gallart, A Hermoso Pulido, I Anzar Martínez de Lagrán, ...
Nucleic acids research 44 (D1), D1161-D1166, 2016
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants
W Sanseverino, A Hermoso, R D’Alessandro, A Vlasova, G Andolfo, ...
Nucleic acids research 41 (D1), D1167-D1171, 2012
Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition
JR Willis, P González-Torres, AA Pittis, LA Bejarano, L Cozzuto, ...
Microbiome 6, 1-17, 2018
Scalable design of paired CRISPR guide RNAs for genomic deletion
C Pulido-Quetglas, E Aparicio-Prat, C Arnan, T Polidori, T Hermoso, ...
PLoS computational biology 13 (3), e1005341, 2017
ArchDB: automated protein loop classification as a tool for structural genomics
J Espadaler, N Fernandez‐Fuentes, A Hermoso, E Querol, FX Aviles, ...
Nucleic acids research 32 (suppl_1), D185-D188, 2004
MasterOfPores: a workflow for the analysis of oxford nanopore direct RNA sequencing datasets
L Cozzuto, H Liu, LP Pryszcz, TH Pulido, A Delgado-Tejedor, ...
Frontiers in Genetics 11, 211, 2020
MyMpn: a database for the systems biology model organism Mycoplasma pneumoniae
JAH Wodke, A Alibés, L Cozzuto, A Hermoso, E Yus, M Lluch-Senar, ...
Nucleic acids research 43 (D1), D618-D623, 2015
Bioinformatics and moonlighting proteins
S Hernández, L Franco, A Calvo, G Ferragut, A Hermoso, I Amela, ...
Frontiers in bioengineering and biotechnology 3, 90, 2015
QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
R Olivella, C Chiva, M Serret, D Mancera, L Cozzuto, A Hermoso, ...
Journal of Proteome Research 20 (4), 2010-2013, 2021
TrSDB: a proteome database of transcription factors
A Hermoso, D Aguilar, FX Aviles, E Querol
Nucleic acids research 32 (suppl_1), D171-D173, 2004
Genome‐wide transcriptomic changes reveal the genetic pathways involved in insect migration
T Doyle, E Jimenez‐Guri, WLS Hawkes, R Massy, F Mantica, J Permanyer, ...
Molecular Ecology 31 (16), 4332-4350, 2022
SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos
D Cicin-Sain, AH Pulido, A Crombach, KR Wotton, E Jiménez-Guri, ...
Nucleic Acids Research 43 (D1), D751-D755, 2015
Can bioinformatics help in the identification of moonlighting proteins?
S Hernández, A Calvo, G Ferragut, L Franco, A Hermoso, I Amela, ...
Biochemical Society Transactions 42 (6), 1692-1697, 2014
ExOrthist: a tool to infer exon orthologies at any evolutionary distance
Y Márquez, F Mantica, L Cozzuto, D Burguera, A Hermoso-Pulido, ...
Genome biology 22, 1-23, 2021
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