MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution TL Kaufmann, M Petkovic, TBK Watkins, EC Colliver, S Laskina, N Thapa, ... Genome biology 23 (1), 241, 2022 | 46 | 2022 |
Machine learning analysis of τRAMD trajectories to decipher molecular determinants of drug-target residence times DB Kokh, T Kaufmann, B Kister, RC Wade Frontiers in molecular biosciences 6, 36, 2019 | 43 | 2019 |
Electrostatic and bending energies predict staggering and splaying in nonmuscle myosin II minifilaments TL Kaufmann, US Schwarz PLoS computational biology 16 (7), e1007801, 2020 | 9 | 2020 |
SMITH: spatially constrained stochastic model for simulation of intra-tumour heterogeneity A Streck, TL Kaufmann, RF Schwarz Bioinformatics 39 (3), btad102, 2023 | 4 | 2023 |
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity TBK Watkins, EC Colliver, MR Huska, TL Kaufmann, EL Lim, CB Duncan, ... PLoS computational biology 19 (10), e1011379, 2023 | 3* | 2023 |
Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastoma M Burkert, E Blanc, N Thiessen, C Weber, J Toedling, R Monti, ... bioRxiv, 2022.08. 16.504100, 2022 | 1 | 2022 |
Improved identification of cancer mutational processes TL Kaufmann, RF Schwarz Nature Genetics, 1-2, 2024 | | 2024 |
Chromosomal instability drives spatial and temporal phenotypic diversity in Schwann cancer cells H Yan, J Demeulemeester, A Verfaillie, CC Martin, T Kaufmann, ... Cancer Research 82 (12_Supplement), 1606-1606, 2022 | | 2022 |