|Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls|
J Chen, N Chia, KR Kalari, JZ Yao, M Novotna, MMP Soldan, DH Luckey, ...
Scientific reports 6 (1), 1-10, 2016
|Diet and exercise orthogonally alter the gut microbiome and reveal independent associations with anxiety and cognition|
SS Kang, PR Jeraldo, A Kurti, MEB Miller, MD Cook, K Whitlock, ...
Molecular neurodegeneration 9 (1), 1-12, 2014
|The microbiome of the chicken gastrointestinal tract|
CJ Yeoman, N Chia, P Jeraldo, M Sipos, ND Goldenfeld, BA White
Animal health research reviews 13 (1), 89, 2012
|Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium|
R Sinha, G Abu-Ali, E Vogtmann, AA Fodor, B Ren, A Amir, E Schwager, ...
Nature biotechnology 35 (11), 1077, 2017
|The microbiome of aseptically collected human breast tissue in benign and malignant disease|
TJ Hieken, J Chen, TL Hoskin, M Walther-Antonio, S Johnson, S Ramaker, ...
Scientific reports 6, 30751, 2016
|Pregnancy's stronghold on the vaginal microbiome|
MRS Walther-António, P Jeraldo, MEB Miller, CJ Yeoman, KE Nelson, ...
PloS one 9 (6), e98514, 2014
|Relationship between microbiota of the colonic mucosa vs feces and symptoms, colonic transit, and methane production in female patients with chronic constipation|
G Parthasarathy, J Chen, X Chen, N Chia, HM O'Connor, PG Wolf, ...
Gastroenterology 150 (2), 367-379. e1, 2016
|Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes|
P Jeraldo, M Sipos, N Chia, JM Brulc, AS Dhillon, ME Konkel, CL Larson, ...
Proceedings of the National Academy of Sciences 109 (25), 9692-9698, 2012
|Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome|
ME Berg Miller, CJ Yeoman, N Chia, SG Tringe, FE Angly, RA Edwards, ...
Environmental microbiology 14 (1), 207-227, 2012
|Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility|
CT Seto, P Jeraldo, R Orenstein, N Chia, JK DiBaise
Microbiome 2 (1), 1-11, 2014
|Collecting fecal samples for microbiome analyses in epidemiology studies|
R Sinha, J Chen, A Amir, E Vogtmann, J Shi, KS Inman, R Flores, ...
Cancer Epidemiology and Prevention Biomarkers 25 (2), 407-416, 2016
|Potential contribution of the uterine microbiome in the development of endometrial cancer|
MRS Walther-António, J Chen, F Multinu, A Hokenstad, TJ Distad, ...
Genome medicine 8 (1), 122, 2016
|Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis|
J Sung, S Kim, JJT Cabatbat, S Jang, YS Jin, GY Jung, N Chia, PJ Kim
Nature communications 8 (1), 1-12, 2017
|Shifts in the fecal microbiota associated with adenomatous polyps|
VL Hale, J Chen, S Johnson, SC Harrington, TC Yab, TC Smyrk, H Nelson, ...
Cancer Epidemiology and Prevention Biomarkers 26 (1), 85-94, 2017
|Microbiome at the frontier of personalized medicine|
PC Kashyap, N Chia, H Nelson, E Segal, E Elinav
Mayo Clinic Proceedings 92 (12), 1855-1864, 2017
|IM-TORNADO: a tool for comparison of 16S reads from paired-end libraries|
P Jeraldo, K Kalari, X Chen, J Bhavsar, A Mangalam, B White, H Nelson, ...
PloS one 9 (12), e114804, 2014
|On the suitability of short reads of 16S rRNA for phylogeny‐based analyses in environmental surveys|
P Jeraldo, N Chia, N Goldenfeld
Environmental microbiology 13 (11), 3000-3009, 2011
|Comparison of collection methods for fecal samples in microbiome studies|
E Vogtmann, J Chen, A Amir, J Shi, CC Abnet, H Nelson, R Knight, N Chia, ...
American journal of epidemiology 185 (2), 115-123, 2017
|Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing|
M Thoendel, PR Jeraldo, KE Greenwood-Quaintance, JZ Yao, N Chia, ...
Journal of microbiological methods 127, 141-145, 2016
|Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models|
MN Benedict, MB Mundy, CS Henry, N Chia, ND Price
PLoS Comput Biol 10 (10), e1003882, 2014